Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1986 ATGTCAAACAACGTTTCAGGAGATGAAGGAAGCTTCTCGTCCGGGAACACAGGAGAAGAAGTGAAGGATAATCAACATGATCATCTACAGCAACAAAACCACTTGGTTGGCCCCACAGATTCAGATCCGAACGCTGAGATTATGGCGTTGTCGCCGACGACGCTGATGGCGAGGAATAGATTCGTGTGCGAGATATGCAACAAGGGGTTTCAGAGGGACCAGAACCTGCAGCTGCACAGGAGAGGGCACAATCTGCCGTGGAAGCTGAGGCAGAGGACGAGCACGGAGGTGAAGAAGAGGGTGTACGTGTGCCCCGAACCCACCTGCGTGCACCATAACCCAGCTCGAGCATTGGGAGACCTCACAGGCATCAAGAAGCATTACAGCAGAAAGCACGGCGAGAAGAAGTGGAAGTGTGATAAGTGCTCCAAACGATACGCCGTCCAATCTGACTGGAAGGCCCACCACAAAACCTGTGGCACCCGCGAATACAAATGCGATTGTGGCACCATTTTCTCCAGGAGAGATAGCTTCATCACGCACAGGGCTTTTTGTGACGCGTTAGCTGAAGAAAACAACCGAGTGAACCAAGGATTAAGCAGCGGCATGCAAAATCATCAGGTGGCTGATCTTATGCTCACTATGCCTCTCACCACCTCCTCCGACTTCAACTACCCACTTAGGCCCATCTCCCAGGACCTCAGCCCAAGCCCATTTAATCGCATTAGCATGGGTGGGCCCATGTTCTCCACAACATCCCCTTCCCTCTTCGCTGGCCCAAAGCCCATCTCTCCCTCCTCCTCCTCCGCCCTCCAGCTCAGCTCCAACACTTCCTCTCCCACTTTCAGTTACTTCCCTGCAGACAGCAAAAACATGGGCCCAAACCCAATGTTTTCTGGGTCGGCCCAAATGTCCGCAACGTCTTTGTTACAGATAGCGGCCCAAATGGGTGCCACCGCAAGCAACAACAGCATGGACTCTCCCATGATGCAAAAGAACATGGTGACTAGTACTATGGCTGGTCCTGATCATAATAATGTCTCTTCCATTAATAAACCACCATTTTCTGCTGCTGATTCTTCCTCCTACGATCAACCCAACATGGCCGGGATTAGTGGTGCTGGACCATTCACCAATCGACTGTTTCATAATAAAGTCCCACAAGAAATTTCAGAACTGTTTGATGCTACCAGTGCTGTTGCTGCTGCGACTGGATCAGCAATTCCTGATATGGGTGTGTTCGGCCAGATTTTCCTCGCAAGTGATCAGAACCAGGGATTAGTGATGAAGAACAATGTGGAACGAGAGAATAACAGTACTACTACAAGTTCAAGCTTGATGATGCATGGGAGAGATGTAAGAGAAGAGAATCCGATGGGGCCTAATAATAATATGGCAACGGTTCATGATTTCTTGGGTGTCGGTGGCGGTTCGGCGAATTTTCATGAGCCAGATCAGCAACAAAGGTTGGAGTTAGAAGCAATGAATCATCAGAGAGTATCATCAGTTATGAATCACTTTCATCAACACCATAATCTTCCTCGTGGGGATTCACCTTTGGATAAAACCATTTGGGATGTTTGA 1584 0.4931 MSNNVSGDEGSFSSGNTGEEVKDNQHDHLQQQNHLVGPTDSDPNAEIMALSPTTLMARNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSTEVKKRVYVCPEPTCVHHNPARALGDLTGIKKHYSRKHGEKKWKCDKCSKRYAVQSDWKAHHKTCGTREYKCDCGTIFSRRDSFITHRAFCDALAEENNRVNQGLSSGMQNHQVADLMLTMPLTTSSDFNYPLRPISQDLSPSPFNRISMGGPMFSTTSPSLFAGPKPISPSSSSALQLSSNTSSPTFSYFPADSKNMGPNPMFSGSAQMSATSLLQIAAQMGATASNNSMDSPMMQKNMVTSTMAGPDHNNVSSINKPPFSAADSSSYDQPNMAGISGAGPFTNRLFHNKVPQEISELFDATSAVAAATGSAIPDMGVFGQIFLASDQNQGLVMKNNVERENNSTTTSSSLMMHGRDVREENPMGPNNNMATVHDFLGVGGGSANFHEPDQQQRLELEAMNHQRVSSVMNHFHQHHNLPRGDSPLDKTIWDV 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1986 527 SMART c2h2final6 61 83 IPR013087 -
Acco02g1986 527 SMART c2h2final6 102 132 IPR013087 -
Acco02g1986 527 SMART c2h2final6 137 157 IPR013087 -
Acco02g1986 527 MobiDBLite consensus disorder prediction 342 370 - -
Acco02g1986 527 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Acco02g1986 527 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 30 493 IPR031140 -
Acco02g1986 527 MobiDBLite consensus disorder prediction 1 19 - -
Acco02g1986 527 FunFam protein indeterminate-domain 12-like 40 108 - -
Acco02g1986 527 Gene3D Classic Zinc Finger 39 107 - -
Acco02g1986 527 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Acco02g1986 527 FunFam protein indeterminate-domain 5, chloroplastic-like 115 194 - -
Acco02g1986 527 Gene3D Classic Zinc Finger 115 195 - -
Acco02g1986 527 MobiDBLite consensus disorder prediction 1 28 - -
Acco02g1986 527 MobiDBLite consensus disorder prediction 342 368 - -
Acco02g1986 527 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1986 Acco-ChrAcco02 15953103 15955425 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1986 42 325 IDZ Gene Family AT3G50700 52.903 9.51e-104 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g1986 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1986 02 15953103 15955425 Acco02g1986 02 15953103 15955425 ECH