Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1983 ATGGAGCTGTACGGTCGGAACCCGGCTAGGAATGGGTCGCAACCCAGTAATCAATCTGAATGGCACCCGTCAGGTGGCGAGGCTGAGCTTGAAGAATCGATGTGGCACTTAACCATCGGTGGCAGCGAATCTTACCCGGAGCGACCCGGCGCACCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATACGGTAGCAGGTGCCGTTACCATCATCCTCGTGATCGCGCCGCGGTTGCAGCAGCTGTGAGGGCTACTGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGCCAGTATTATTTAAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAGATTTCACCATCCAAAACACGGAGGTGGATCATTAAGTCAAGCTCCACTGAATATTTATGGATTCCCGTTACGTCCGGGTGAGAAAGAATGCTCCTATTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCAGTTGGCACATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTGCGGTCCCTCTAGCTGAACAGTATGGGGGGGCATCCAACAGTTTGAGAGTGGCTAGGCCTTCAATATTGCCTGGTTCTTATGTGCAAGGGCCTTATGGTCCCGTCCTACTTTCTCCAGGTGTTGTTCCCTTTCAAGGATGGAGTCCGTATACGGCACCCATGAGTCCTGTGTTATCTCCTGGTGCTCAGTCTGCTGTTGGGGCTACTTCTCTGTATGGAGTGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATAATCCTCTTCCATCTACTACTGGCCTTTCAGGCAGTGGCCTGAAGGAACATATATTTCCTGAAAGACCTGGTGAACCTGAATGCCAATACTATCTAAGAACGGGGGACTGCAAATATGGATTAGCATGTCGATTTCATCATCCCAGGGACCGGACAGTGGCACGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGGGGGTGCAACCTTGTGTTTTTTACTTACAAAACGGGCATTGCAAGTTCGGCTCCACTTGCAAATTTGACCATCCTTTGGGGTCTGTGAGGTACAGTCCATCAGCATCTTCTCTCACTGATATGCCAGTAACTCCATACCCTGTTGGATCCTTGCTATCTACCCTGGCTCCTTCAACGACATCTTCCGACCTTCGGCCTGAACTTATGTCAGGCGCAAAAGTGGAATCTTTTGCTTCTAGAAGGCCATCCTCTGGAAATGGTTCAAGCAATTCTGTCAGTTTAATTTTCTCACAAGGTGGATCTGTCTCTCTTTCTGATGTGCAGCTCTCAAGTCAAACTCCTACTCCTTTAAGCAGTAGCAGAAGCACTCGACAAAGTGGTGACATACGATGA 1416 0.4922 MELYGRNPARNGSQPSNQSEWHPSGGEAELEESMWHLTIGGSESYPERPGAPNCVYYMRTGFCGYGSRCRYHHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCRFHHPKHGGGSLSQAPLNIYGFPLRPGEKECSYYLKTGQCKFGITCKFHHPQPVGTSMPASAPQFYQQVQSPAVPLAEQYGGASNSLRVARPSILPGSYVQGPYGPVLLSPGVVPFQGWSPYTAPMSPVLSPGAQSAVGATSLYGVTQLSSSTSAFARPYNPLPSTTGLSGSGLKEHIFPERPGEPECQYYLRTGDCKYGLACRFHHPRDRTVARPLLSPIGLPLRPGVQPCVFYLQNGHCKFGSTCKFDHPLGSVRYSPSASSLTDMPVTPYPVGSLLSTLAPSTTSSDLRPELMSGAKVESFASRRPSSGNGSSNSVSLIFSQGGSVSLSDVQLSSQTPTPLSSSRSTRQSGDIR 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1983 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Acco02g1983 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 298 323 IPR000571 GO:0046872
Acco02g1983 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 342 366 IPR000571 GO:0046872
Acco02g1983 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Acco02g1983 471 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Acco02g1983 471 SUPERFAMILY CCCH zinc finger 53 77 IPR036855 GO:0046872
Acco02g1983 471 PANTHER PROTEIN PHOSPHATASE RELATED 18 380 - -
Acco02g1983 471 MobiDBLite consensus disorder prediction 9 23 - -
Acco02g1983 471 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Acco02g1983 471 MobiDBLite consensus disorder prediction 1 27 - -
Acco02g1983 471 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Acco02g1983 471 MobiDBLite consensus disorder prediction 446 471 - -
Acco02g1983 471 Gene3D - 92 176 - -
Acco02g1983 471 Gene3D - 36 88 - -
Acco02g1983 471 Gene3D - 295 378 - -
Acco02g1983 471 ProSiteProfiles Zinc finger C3H1-type profile. 296 324 IPR000571 GO:0046872
Acco02g1983 471 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Acco02g1983 471 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Acco02g1983 471 SMART c3hfinal6 296 323 IPR000571 GO:0046872
Acco02g1983 471 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Acco02g1983 471 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Acco02g1983 471 SMART c3hfinal6 340 367 IPR000571 GO:0046872
Acco02g1983 471 SUPERFAMILY CCCH zinc finger 142 166 IPR036855 GO:0046872
Acco02g1983 471 ProSiteProfiles Zinc finger C3H1-type profile. 340 368 IPR000571 GO:0046872
Acco02g1983 471 SUPERFAMILY CCCH zinc finger 300 324 IPR036855 GO:0046872
Acco02g1983 471 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
Acco02g1983 471 SUPERFAMILY CCCH zinc finger 342 371 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1983 Acco-ChrAcco02 15893059 15903951 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1983 1 416 C2H2 Transcription Factor Family AT5G18550 52.511 1.75e-137 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco02g1983 zf-CCCH 5.2e-08 CL0537