Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1981 ATGGAGTTGTACGGTCGGAACCCGGCTTGGAATGGGTCGCAGCAGGGTTATCAATCTGAATGGCACCCATCAGGCGGTGAAACTGGGCTTGAAGAATCGATGTGGCACTTAACCGTCGGTGGCAGCGAATCTTACCCGGAGCGACCTGGCGCGCCCAATTGTGTGTATTACATGCGAACCGGGTTCTGTGGATACGGTAGCAGGTGCCGTTACAATCATCCTCGTGATCGTGCTGCGGTTGCAGCAGCTGTGAGAGCTACAGGGGAGTACCCAGAACGAGTGGGGGAACCTTCATGTCAGTATTATTTGAAAACGGGAACCTGCAAATTTGGTGCATCCTGTAAATTTCACCATCCAAAACACGGAGGTGGCTCATTAAGTCAAGCTCCACTAAATATTTATGGATACCCGTTACGTCCGGGTGAGAAAGAATGCTCCTACTATTTGAAGACGGGGCAGTGCAAATTTGGTATAACTTGTAAATTCCATCATCCTCAACCAGCTGGCACATCAATGCCAGCATCTGCACCTCAGTTTTATCAACAGGTGCAGTCTCCTACAGTCCCTCTAGCCGAACAGTATGGGGGGGCATCCAGCAGCTTGAGAGTGGCTAGGCCTTCAATATTGCCTGGTTCATATGTGCAAGGGGCTTATGGTCCCGTCCTTCTTTCTCCAGGAGTTGTTCCCTTTCCAGGATGGAGTCCTTATACGGCACCTGTGAGTCCTGTGTTATCTCCTGACGCTCAGTCTTCTCATTCTGCTGTTGGGGCTACTTCTCTGTATGGAATGACCCAGTTGTCTTCATCAACATCAGCTTTTGCTAGACCATATACTCCTCTTCCATCTAATACTGGCCTTTCAGGCAGTGGCCTGAAGGAACAAATATTTCCTGAAAGACCTGGTGAACCTGAATGCCATTACTATCTGAGAACAGGGGACTGCAAATATGGATTAGCATGTCGATTTCATCATCCCAGGGAGCGGACAGTGACCCGGCCACTTCTCAGCCCCATTGGTCTTCCTTTACGTCCGCAATACTATTAA 1044 0.4952 MELYGRNPAWNGSQQGYQSEWHPSGGETGLEESMWHLTVGGSESYPERPGAPNCVYYMRTGFCGYGSRCRYNHPRDRAAVAAAVRATGEYPERVGEPSCQYYLKTGTCKFGASCKFHHPKHGGGSLSQAPLNIYGYPLRPGEKECSYYLKTGQCKFGITCKFHHPQPAGTSMPASAPQFYQQVQSPTVPLAEQYGGASSSLRVARPSILPGSYVQGAYGPVLLSPGVVPFPGWSPYTAPVSPVLSPDAQSSHSAVGATSLYGMTQLSSSTSAFARPYTPLPSNTGLSGSGLKEQIFPERPGEPECHYYLRTGDCKYGLACRFHHPRERTVTRPLLSPIGLPLRPQYY 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1981 347 ProSiteProfiles Zinc finger C3H1-type profile. 93 121 IPR000571 GO:0046872
Acco02g1981 347 SUPERFAMILY CCCH zinc finger 303 327 IPR036855 GO:0046872
Acco02g1981 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 301 326 IPR000571 GO:0046872
Acco02g1981 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 96 120 IPR000571 GO:0046872
Acco02g1981 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 51 75 IPR000571 GO:0046872
Acco02g1981 347 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 141 166 IPR000571 GO:0046872
Acco02g1981 347 ProSiteProfiles Zinc finger C3H1-type profile. 48 76 IPR000571 GO:0046872
Acco02g1981 347 FunFam Zinc finger nuclease 2 47 124 - -
Acco02g1981 347 ProSiteProfiles Zinc finger C3H1-type profile. 299 327 IPR000571 GO:0046872
Acco02g1981 347 Gene3D - 283 335 - -
Acco02g1981 347 Gene3D - 47 125 - -
Acco02g1981 347 SMART c3hfinal6 93 120 IPR000571 GO:0046872
Acco02g1981 347 SMART c3hfinal6 139 166 IPR000571 GO:0046872
Acco02g1981 347 SMART c3hfinal6 299 326 IPR000571 GO:0046872
Acco02g1981 347 SMART c3hfinal6 48 75 IPR000571 GO:0046872
Acco02g1981 347 SUPERFAMILY CCCH zinc finger 97 120 IPR036855 GO:0046872
Acco02g1981 347 SUPERFAMILY CCCH zinc finger 53 77 IPR036855 GO:0046872
Acco02g1981 347 SUPERFAMILY CCCH zinc finger 141 167 IPR036855 GO:0046872
Acco02g1981 347 Gene3D - 126 174 - -
Acco02g1981 347 PANTHER PROTEIN PHOSPHATASE RELATED 18 345 - -
Acco02g1981 347 ProSiteProfiles Zinc finger C3H1-type profile. 139 167 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1981 Acco-ChrAcco02 15883478 15887651 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1981 1 344 C2H2 Transcription Factor Family AT5G18550 52.210 8.79e-117 344
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco02g1981 zf-CCCH 1.9e-09 CL0537