Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1969 ATGAGTGATTCTCCGAAGCACCCAAATCTTCCGGATAAAGATCAACTGCCGAAGGCTCAAAGGCCATGCGACTACTGCGGCGACTCCACTGGTATTCTCTACTGTCGAGCTGATTCTGCGAAGCTATGTTTCGCTTGTGATCGTGAAGTTCACTCTACCAACCAGCTCTTCTCGAAGCACACTCGAGCTCTGCTCTGTGATGCCTGTGACGATTCGCCGGCCACAATACTATGTTCTACGGAAAACTCCGTTTTCTGCCAGAATTGTGATTGGGAACGGCACAACCTTTCGCTGTCTGTGGTGCACGATAGGAGGCCACTCGAGGGCTTCACTGGCTGTCCTTCCGTCAGTGAGTTATTATCGATTCTAGGTTTTGAAGATTTGGGCAAGAAAGCCCTGGTTTCGACTGAGGATTGTGGAGGATGTGGCGGCGGCAGTGGCGATGGGTTAGTGGGATCTGAGCTTGGAGAGGGCCTTTGGGATTTGTTGGTATGGGATGCTCCTGCTGTTGTTAGCCTTGACGATTTGATAACTTCCACAAGCTCGTCTCACAATTATCAGGCCATGGAGGTTCCTCCTCTGCCTAAGAATCGTAAGGCTGCTTGTGGGCAACACAAGGAAGAAATCATAAGTCAGCTTCGTGAGCTAGCACGGTTGGAGCCCAGCTTGAAATCTGGAGATGTAGATACTGAACGACTGAGCTCCAAGCACCCCATAGTTCCTGAACATTATTTACGGTCGTCAAGCTTGTCTACAGGTTTTGAACGTGAATTCGAGGTTGATGTTTTTCCTTCATATGAGACAAGTGTTTTTGAGGGGCCTAGAGACAGTGAGACTAATCAAGTGGTTCCTCCTAACACATCGTTGTATAAAGAGGAAGTCCAAGACTTACATTCAGTTTCCCCTGGCTGTGGGAGTCATACCTATCTTAACAATGGTGGACAACTGCCAAACTCTTTTAACTCTGAAAACTTGTCGACCGCTCCGAAAGTTGCTTCATATGAGCTGACAAGTCAAGAAAGAGACTCTGCATTATTACGTTACAAGGAGAAGAAGAAAACAAGAAGATATGACAAGCATATAAGGTATGAATCACGAAAAGCTCGGGCAGAAAGCAGGACAAGAATCAAGGGTCGTTTTGCTAAGATAGAACACTGA 1158 0.4706 MSDSPKHPNLPDKDQLPKAQRPCDYCGDSTGILYCRADSAKLCFACDREVHSTNQLFSKHTRALLCDACDDSPATILCSTENSVFCQNCDWERHNLSLSVVHDRRPLEGFTGCPSVSELLSILGFEDLGKKALVSTEDCGGCGGGSGDGLVGSELGEGLWDLLVWDAPAVVSLDDLITSTSSSHNYQAMEVPPLPKNRKAACGQHKEEIISQLRELARLEPSLKSGDVDTERLSSKHPIVPEHYLRSSSLSTGFEREFEVDVFPSYETSVFEGPRDSETNQVVPPNTSLYKEEVQDLHSVSPGCGSHTYLNNGGQLPNSFNSENLSTAPKVASYELTSQERDSALLRYKEKKKTRRYDKHIRYESRKARAESRTRIKGRFAKIEH 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1969 385 Pfam B-box zinc finger 20 62 IPR000315 GO:0008270
Acco02g1969 385 Pfam B-box zinc finger 64 106 IPR000315 GO:0008270
Acco02g1969 385 ProSiteProfiles Zinc finger B-box type profile. 18 65 IPR000315 GO:0008270
Acco02g1969 385 ProSiteProfiles CCT domain profile. 341 383 IPR010402 GO:0005515
Acco02g1969 385 SMART bboxneu5 18 65 IPR000315 GO:0008270
Acco02g1969 385 SMART bboxneu5 66 107 IPR000315 GO:0008270
Acco02g1969 385 CDD Bbox1_BBX-like 22 65 - -
Acco02g1969 385 ProSiteProfiles Zinc finger B-box type profile. 61 107 IPR000315 GO:0008270
Acco02g1969 385 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 22 382 - -
Acco02g1969 385 Pfam CCT motif 341 382 IPR010402 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1969 Acco-ChrAcco02 15763721 15765688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1969 21 356 C2C2-CO-like Transcription Factor Family AT2G47890 41.379 1.69e-73 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Acco02g1969 CCT 8e-16 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1969 02 15763721 15765688 Acco02g1969 02 15763721 15765688 ECH