Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1956 ATGCATGAGAGAGCATGTAAGGCGAGGCGATACAAAGGCGCTTCGTTCATATCGGCGCATATTAGCAAACATCGCCTCCATCATCGTTCAAGGCTGAGACCAGAGAGAGACACTCTTGTGGTGGCTTTAGCAGGCATGAAGGAGCATTTACTTCCCATGAGGCGCCCCAAGAGGATGAGCGGTATGGCTGCTGCTGCGAACAAAGCGTCCCCACCAGCGAATCGCTACCCAAAAAATGGCGACGGAACTCCGACATTTAACTATGGCGGACTCTCCGGGGAAGGCGAGAAAGATGTTTTGAATGATTCGCTGTGGCAAGCTTGCGCCGGTTCTTCTGTCGTTGTTCCTCGCGCTGGGGACTTGGTCTTCTACTTTCCGCAAGGCCACTTGGAACAGGTGGCTGACTTTACTCGCCAGGATGGTCACATTGAACTTCCTGCTAGTGATTTCCCTTCTAAAATCCTTTGCAGGGTCATGGGTGTTCAATTAAAGGCTGAAGCCAACACAGACGAGGTTTTCGCTCAAATTACTTTAATTCCTGAGTCAAAGCTAGATGAAGTTAGTTCAGACGATAAAGAGTCTCGACCAAAACCCAGAACTACTTCCAGGTGCTTTCGTAAGACGCTCACCCTATCAGATACAGGTGCACATGGTGGATTCTCCATTCCTAAGAAACTGGCCGAGGAATGCTTCCCACCTCTGGATATGTCCCAGCAACCACCAGGACAAGAGCTTGTTGCGAAGGACTTGCATGGTGTTATATGGACTTTTCGCCATACCTATCGGGGTCAGCCGAAACGACACCTGCTTACTGGCGGTTGGAGTTCATTCCTCCATTCAAAAAAGCTTGAACCCGGAGATACATGCATTTTTCTTTGCGGAGAAAATAGAGAACTTGGCATTGGGATCCGTCGAGCACTTAAACAACACAACAGAGCATCCTCATCCACATGCGTGATATCTGGTCATAGCATGCTACTCGGGATATTAGCCACTGCTTCTTATGCTGTTGCTACTGGATCCATGTTTACTGTCTACTACCGTCCTTGGACTTGTCCCTCTGAATTCATTGTTCCACTGGGTCAATACATGAAGTCAAATAAAATGAAATATTCATGTGGAATGAGCATACAAATGCAGTTTGAAACCGAAGAATCTACAAGAAGGTATGCAGGAACAATAATAGGTACTGATGATATTGATGGCATGAGGTGGCCTAATTCAGAATGGAGATGTCTCAAGGTGAAATGGGACGCGAAGTTTGATACAGATATGCCTCCAGAAAGGGTTAGTCCTTGGAACATTGAGCCCTTGGAATCTTCCGGGAAGAACATTCCTAATCTAGCCCCACCAAAGAGGCCACGGCTACTTGGCCCATCAATGTCTGGATTATTCGTTCTTACCAAGGATGACATCGATCTGAACTCAGCCAACAATGCTTCTCGGAGATGTGAAAGGGACTTACAAGGTCAAGATAACAAAGAAGTAGGCTTCCAACAATTTGACTCTCAGTTCAGGACAAAGAATCAACCGCACTTTCAACTGAAAATCCCTTCTTGCAATTCTCTTGGTGGCTCAGCAGCATTTCCAGATGATGACATTTCAACTTCAAGCCCCCTCAAGCAGCCCCCTATCCCAACCACTTGCGATGCATGCAATAATTTCCCCGTCACCAAGTACCATTCACTCTCAAATGTGAACTCCAATGATTCTGAATCCCATGGATGTCGGGCCTCTGATTCAAGGGATGAGAATGATAGTAAAACTGAATGCAAGCTTTTCGGGATAAGCCTAAACCACCCGGAGCTCCCTTCACCACAAGTTGCTGCTTCTAGCAGTACTTCAACCCATGACGTTCCCCCAATGTCTCAGTCAAGCGTTTCTGCGACTATCCCGGTTTCCAAACTATTAAAGGGTATTTCAGGTGTTACGTCGCAGAACAAATGCAAGAAATGCAGCTCTGTCAATAGCAGGACTTGCACAAAGGTGCTTAAGCGTGGAAGTGCACTTGGTAGATCAATTGACCTCTCGCGTATCACTGGATACAATGAACTCATTTCTGAACTGGACTTGATGTTTGATTTCAAAGGAAGCTTAATAAATGGAAGCAGTGGATGGCATGTTGTCCCCATGGATGATGATGGGGATATGATACTGTTAGGAGATTTCCCGTGGCAGGATTTTCAGTCCATGGTGCAAAAGATGATCATTTGTCCAAAGGAGGACTCAAACAACCGGAGTGCTATTGCTAGCACAGCAGACTCAACAACCCTGTAA 2277 0.4646 MHERACKARRYKGASFISAHISKHRLHHRSRLRPERDTLVVALAGMKEHLLPMRRPKRMSGMAAAANKASPPANRYPKNGDGTPTFNYGGLSGEGEKDVLNDSLWQACAGSSVVVPRAGDLVFYFPQGHLEQVADFTRQDGHIELPASDFPSKILCRVMGVQLKAEANTDEVFAQITLIPESKLDEVSSDDKESRPKPRTTSRCFRKTLTLSDTGAHGGFSIPKKLAEECFPPLDMSQQPPGQELVAKDLHGVIWTFRHTYRGQPKRHLLTGGWSSFLHSKKLEPGDTCIFLCGENRELGIGIRRALKQHNRASSSTCVISGHSMLLGILATASYAVATGSMFTVYYRPWTCPSEFIVPLGQYMKSNKMKYSCGMSIQMQFETEESTRRYAGTIIGTDDIDGMRWPNSEWRCLKVKWDAKFDTDMPPERVSPWNIEPLESSGKNIPNLAPPKRPRLLGPSMSGLFVLTKDDIDLNSANNASRRCERDLQGQDNKEVGFQQFDSQFRTKNQPHFQLKIPSCNSLGGSAAFPDDDISTSSPLKQPPIPTTCDACNNFPVTKYHSLSNVNSNDSESHGCRASDSRDENDSKTECKLFGISLNHPELPSPQVAASSSTSTHDVPPMSQSSVSATIPVSKLLKGISGVTSQNKCKKCSSVNSRTCTKVLKRGSALGRSIDLSRITGYNELISELDLMFDFKGSLINGSSGWHVVPMDDDGDMILLGDFPWQDFQSMVQKMIICPKEDSNNRSAIASTADSTTL 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1956 758 CDD B3_DNA 203 305 IPR003340 GO:0003677
Acco02g1956 758 Gene3D - 653 747 - -
Acco02g1956 758 ProSiteProfiles PB1 domain profile. 658 740 IPR000270 GO:0005515
Acco02g1956 758 Gene3D - 203 307 IPR015300 -
Acco02g1956 758 MobiDBLite consensus disorder prediction 602 627 - -
Acco02g1956 758 MobiDBLite consensus disorder prediction 564 586 - -
Acco02g1956 758 FunFam Auxin response factor 370 442 - -
Acco02g1956 758 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 98 744 IPR044835 GO:0003677|GO:0006355|GO:0009725
Acco02g1956 758 Gene3D - 370 444 - -
Acco02g1956 758 SUPERFAMILY DNA-binding pseudobarrel domain 200 313 IPR015300 -
Acco02g1956 758 Pfam AUX/IAA family 648 738 IPR033389 -
Acco02g1956 758 SUPERFAMILY CAD & PB1 domains 657 734 - -
Acco02g1956 758 MobiDBLite consensus disorder prediction 604 627 - -
Acco02g1956 758 ProSiteProfiles B3 DNA-binding domain profile. 205 307 IPR003340 GO:0003677
Acco02g1956 758 FunFam Auxin response factor 203 307 - -
Acco02g1956 758 SMART B3_2 205 307 IPR003340 GO:0003677
Acco02g1956 758 Pfam Auxin response factor 333 414 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Acco02g1956 758 Pfam B3 DNA binding domain 205 305 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1956 Acco-ChrAcco02 15666046 15672731 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1956 591 742 B3 DNA Binding Superfamily AT5G62000 34.545 1.51e-22 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Acco02g1956 AUX_IAA 1.1e-05 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1956 02 15666046 15672731 Acco02g1956 02 15666046 15672731 ECH