Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1880 ATGGATCAGCGCCCATCCTCTGCTAGACGCAGCTTGAAGCGCAAGCTCGAACAAGAATTCGAGGAAGATGGAGCAGATCAACTAACGGCTAAAGGGTTGGTTTTCGAACCTCAAAAGCCTCATCAGGATATTTTGAGTGAAGTTGTGTCGCAAGTCACTGTGCTCAACTCCAGTTTCTCATCGTCTCAATCGGATCGCCTCGCGGCCAAGCGTGCGGTTCATGTTCTCTGTGAACTCGCAAAGAATGAGGAACTTGTGAGTAGTATAGTAGGCTGTGGAGCTGTTCCTGCTTTGTTAAGACATCTCAAAGCACCAGAAACAGTTAGAGAAGGTGACGGTGGTCCCAAGCCTTACGAGCATGAGGTGGAAAAGGGATGTGCCTTCGTCCTTGGGCTTCTTGCTGTTAAACCAGAGCATCAACAACTCATTGTTGATGCTGGAGCTCTGCCCTTTCTTATGGATTTGTTAAAGAGGCACAAGACCTGTGTTAGTTCACGGGCACTTACTGGTCTTATAAGGAGAACAGCTGATGCCATCTCAAACCTTGCGCACGAAAACAACACCATTAAAACCCGTGTTAGGATGGAAGGTGGTATCCTTCCTCTTGTTGAATTGCTCAAATATGATGATGCAAAGGTACAAAGAGCATCTGCAGGGGCCTTACGAACTCTTGCATTTAAAAATGATGAGAACAAAACCCAGATTGTTGGATGCAATGCACTGCCTACTCTTGTACTAATGCTAGGATCAGAGGACGCTACAATACATTCTGAAGCAGTTGGCGTGATTGGAAATCTGGTTCATTCTTCTCCAAACATGAAGAGAGAAGTTCTTCAAGCTGGTGCTCTTCAACCTGTAATTGGATTACTTAGATCTTGCTGTTTGGAGAGCCAAAGAGAAGCAGCTCTTTTAATTGGTCAATTCGCTGCAACGGATTCTGATTGCAAGGTTCACATTGCTCAAAGAGGGGCTATCCAGCCACTGATTGACATGCTCAAGTCTCCAGATGCACAGCTTCGGGAAATGTCAGCTTTTGCACTTGGGAGACTGGCTCAGGACACACATAATCAAGCTGGTATTGCTTATCATGGTGGTATAGAGCCTCTACTCAACCTTCTTTGCTCTAAGAATGGACCTCTCCAACATAATGCTGCCTTTGCTCTATATGGTCTTGTTGATAACGAGGACAACGTTGCGGATATTGTAAAGCTTGGTGGTGTTCAAAAACTACAGGATGGAGATTTCAAAATTCAACCTACCAGGGAGTGTGTAGGAAAAACAATGAAAAGGTTAGAGGAGAAAATGCATGGACGAGTGTTGGAACAACTTTTGTATCTTATGCGTTTTGGAGAAAAGGCTGTTCAAAGACGTGTAGCTCTGACTCTTGCACATTTATGTTCCCCTGATGATCGGAAGTTTATTTTTGTTGACAACAATGGAATTGAGTTCCTGCTGGATCTTCTAGAATCTACAAATCTCAAACTGAAACGCGATGCTTCAATGGCACTTCACTCGTTGGCTGTCAAAACTACATCTGCCTCTTCCTTCGATGCTGCTCCTCCACCCCCAACTCCTCAGGTATACTTAGGCGAGCAATACGTAAACAATCCTACACTTTCTGATGTCACATTTTTAGTTGAAGGCAAACGATTCTATGCGCACCGAATTTGTTTACTTGCTTCCTCTGATGCGTTTTGTGCTATGTTTGATGGTGGTTACCGGGAAAGGGAAGCCAAAGATATAGAGATTCCTAACATTAAATGGGATGTCTTTGAGTTGATGATGAGATTTATTTACACAGGAAATGTATATATCAATTTGGATGTTGCTCAGGACCTCCTAAAAGCTGCTGATCAGTATCTTTTAGATAGTCTTAAGCGACAATGTGAATATGCAATTGCTCAGGATATTTCCGTGGAAAATGTTTCTCTTATGTACGAGTTGTCAGAGACATTCAATGCAATGTCATTGAGGCAATCATGTATCCTATTTTTATTGGAGCAATTTGATAAACTGAACGTCAAACCATGGTATTGCCGCATGATGCGTCGCATCATCCCAGCTATACATGAATTTTTTGGAAGCTTACTTACAAAGCTTGCACAAGCAAAATCGTACCAGCAATGTCAAAATCCAAGTCACTTTCCAGGAATTTTATTAAACAAGGAGAGAGAAGAAATCATAAACAATCACCACATTATTGCTAAGAAGAATTATATTAAATCAATAATGGACTTTATGTAA 2244 0.4229 MDQRPSSARRSLKRKLEQEFEEDGADQLTAKGLVFEPQKPHQDILSEVVSQVTVLNSSFSSSQSDRLAAKRAVHVLCELAKNEELVSSIVGCGAVPALLRHLKAPETVREGDGGPKPYEHEVEKGCAFVLGLLAVKPEHQQLIVDAGALPFLMDLLKRHKTCVSSRALTGLIRRTADAISNLAHENNTIKTRVRMEGGILPLVELLKYDDAKVQRASAGALRTLAFKNDENKTQIVGCNALPTLVLMLGSEDATIHSEAVGVIGNLVHSSPNMKREVLQAGALQPVIGLLRSCCLESQREAALLIGQFAATDSDCKVHIAQRGAIQPLIDMLKSPDAQLREMSAFALGRLAQDTHNQAGIAYHGGIEPLLNLLCSKNGPLQHNAAFALYGLVDNEDNVADIVKLGGVQKLQDGDFKIQPTRECVGKTMKRLEEKMHGRVLEQLLYLMRFGEKAVQRRVALTLAHLCSPDDRKFIFVDNNGIEFLLDLLESTNLKLKRDASMALHSLAVKTTSASSFDAAPPPPTPQVYLGEQYVNNPTLSDVTFLVEGKRFYAHRICLLASSDAFCAMFDGGYREREAKDIEIPNIKWDVFELMMRFIYTGNVYINLDVAQDLLKAADQYLLDSLKRQCEYAIAQDISVENVSLMYELSETFNAMSLRQSCILFLLEQFDKLNVKPWYCRMMRRIIPAIHEFFGSLLTKLAQAKSYQQCQNPSHFPGILLNKEREEIINNHHIIAKKNYIKSIMDFM 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1880 747 Gene3D Potassium Channel Kv1.1; Chain A 517 666 IPR011333 -
Acco02g1880 747 SMART BTB_4 540 637 IPR000210 GO:0005515
Acco02g1880 747 SUPERFAMILY ARM repeat 173 508 IPR016024 -
Acco02g1880 747 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 197 232 IPR000225 GO:0005515
Acco02g1880 747 ProSiteProfiles BTB domain profile. 540 607 IPR000210 GO:0005515
Acco02g1880 747 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 323 365 IPR000225 GO:0005515
Acco02g1880 747 Gene3D - 299 516 IPR011989 -
Acco02g1880 747 MobiDBLite consensus disorder prediction 1 24 - -
Acco02g1880 747 Gene3D - 172 298 IPR011989 -
Acco02g1880 747 Gene3D - 43 171 IPR011989 -
Acco02g1880 747 SMART arm_5 228 268 IPR000225 GO:0005515
Acco02g1880 747 SMART arm_5 353 393 IPR000225 GO:0005515
Acco02g1880 747 SMART arm_5 468 508 IPR000225 GO:0005515
Acco02g1880 747 SMART arm_5 186 226 IPR000225 GO:0005515
Acco02g1880 747 SMART arm_5 270 310 IPR000225 GO:0005515
Acco02g1880 747 SMART arm_5 82 135 IPR000225 GO:0005515
Acco02g1880 747 SMART arm_5 136 184 IPR000225 GO:0005515
Acco02g1880 747 SMART arm_5 312 352 IPR000225 GO:0005515
Acco02g1880 747 SUPERFAMILY POZ domain 531 634 IPR011333 -
Acco02g1880 747 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 364 406 IPR000225 GO:0005515
Acco02g1880 747 SUPERFAMILY ARM repeat 65 157 IPR016024 -
Acco02g1880 747 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 4 701 IPR044282 -
Acco02g1880 747 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 239 281 IPR000225 GO:0005515
Acco02g1880 747 Pfam Armadillo/beta-catenin-like repeat 228 267 IPR000225 GO:0005515
Acco02g1880 747 Pfam Armadillo/beta-catenin-like repeat 193 225 IPR000225 GO:0005515
Acco02g1880 747 Pfam Armadillo/beta-catenin-like repeat 312 351 IPR000225 GO:0005515
Acco02g1880 747 Pfam BTB/POZ domain 533 635 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1880 Acco-ChrAcco02 14950399 14957486 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1880 206 507 U-box Gene Family AT3G46510 25.083 6.14e-15 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Acco02g1880 BTB 3.2e-26 CL0033