Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1843 ATGGAGCAGTATGAAATTCTAGAACAGATTGGCAAAGGTTCCTTTGGTTCTGCCCTGCTTGTGAGGCATAAGCATGAAAGGAAAAAGTATGTCCTCAAGAAGATCCGCCTTGCCCGTCAAACTGATAGAACCCGCAGATCTGCCCACCAGGAGATGGAGCTAATCTCTAGAGTACAAAATCCCTTTATTGTTGAATATAAAGATTCCTGGGTAGAAAAGGGTTGTTTCGTGTGCATTATCATAGGCTATTGTGAAGGTGGAGACATGGCAGAAGCTATTAAGAAGGCTAGTGGTGTTCATTTTCCAGAAGAGAAACTTTGTAAATGGCTTGTTCAACTCTTGATGGCACTTGATTATTTGCATGCAAACCATATCCTTCATCGTGACGTCAAGTGTTCTAATATATTCTTGACTAAAGATCAAGACATACGACTAGGTGATTTTGGCCTGGCTAAATTACTGACATCTGATGATCTTGCTTCCTCTGTTGTTGGAACTCCGAGTTACATGTGTCCTGAGCTTCTTGCTGATATACCCTATGGTTCAAAGTCAGATATCTGGTCTTTGGGCTGCTGTGTATATGAAATGTCTGCCCACAAGCCAGCTTTTAAAGCTTTTGATATGCAAGCATTAATTAACAAAATAAACAAGTCAATTGTGGCTCCCCTGCCAACCATGTATTCTGGCGCTTTTCGAGGGCTTGTCAAAAGTATGCTCCGGAAAAATCCAGAGCTTAGACCAAGTGCTTCAGAGTTGCTAAATCATCCGCATCTTCAGCCCTACATTCTTAAAATTCACCTGAAACTAAACAGCCCCAGAAGAAGTACTTTTCCATTCCAATGGCCTGAGTCAAACTACGTAAGGAGAACTCGGTTTGTGGAGCCAGATTCTGTCTCCACCCTTTCTGATAGGGGTAAACGCTTGTCATTCAGCAATGACAGCAGGGCCTTGAATCCTAGTGTTTCTGGAACTGAAAAAGATTCTCAGTGTTCTACTCAAAATGGTCATAGATATTCCACTTGTTCAAGGGAGAAACTCTATGAACTATCTGTTGGTTGCGTCCGTGAAGACTGCATAGCTAACAAATCAAAAGCCACAAAGTTCTCAACTGTCGATAGTAATACTCCAAGATTGAGAACGGTTAAGGATTATTCCACCCCCAGAAAGCAGACAACCCCATCAAAAATATTTCATGCTGGTTCAAAGCGTGATTCACTTCTGGTGTCGCATACTCCAGCAGGAGATTCTTCCCCGCCATCACGTAGAGCATCCCTTCCGCTGCCTACAAGAGTCATGACTGCGGAAACCTCTTATAGAGCCAGAGCTGGCTTCCTCCGGACTGTGGAGTCTCCCGACGTTTCTGTTAACGCACCACGAATTGACAAGATTGCTGAATTCCCTCTTGCATCTTCTGAGGAAGCTATCTTTGCTGTCCCCAGAAGGTCATCAACATCTACCATGCGCTCTTCTAGTTCACCAGTTGGTGCTGTTTGCTCAATCACAAAGGACAAGTGCACTGTCCAGGTCGTGGACAAGGCTATGGCAATCCCTGCCAGTGTGAGTGATGCTTGTCCTGAAGCTTCAGGTCCAGGATATGGAAGTGAATGCTCTGAGCATATCACGGCTGATGTTTCGAGTCGGTCATCTGCAGAGTCACAACAGCGTCGGTTTGACACCTCGTCTTACCAGCAACGTGCTGAGGCATTGGAAGGGTTACTTGAGTTCAGTGCAAGGCTCCTACAACAACAGAGGTTTGAAGAACTTGGAGTGTTGTTGAAGCCATTTGGACCAGAGAAGGTTTCTCCAAGAGAAACAGCTATTTGGTTGACCAAGAGTTTTAAAGAAGCTGTGGTCTAA 1857 0.4453 MEQYEILEQIGKGSFGSALLVRHKHERKKYVLKKIRLARQTDRTRRSAHQEMELISRVQNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKASGVHFPEEKLCKWLVQLLMALDYLHANHILHRDVKCSNIFLTKDQDIRLGDFGLAKLLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCVYEMSAHKPAFKAFDMQALINKINKSIVAPLPTMYSGAFRGLVKSMLRKNPELRPSASELLNHPHLQPYILKIHLKLNSPRRSTFPFQWPESNYVRRTRFVEPDSVSTLSDRGKRLSFSNDSRALNPSVSGTEKDSQCSTQNGHRYSTCSREKLYELSVGCVREDCIANKSKATKFSTVDSNTPRLRTVKDYSTPRKQTTPSKIFHAGSKRDSLLVSHTPAGDSSPPSRRASLPLPTRVMTAETSYRARAGFLRTVESPDVSVNAPRIDKIAEFPLASSEEAIFAVPRRSSTSTMRSSSSPVGAVCSITKDKCTVQVVDKAMAIPASVSDACPEASGPGYGSECSEHITADVSSRSSAESQQRRFDTSSYQQRAEALEGLLEFSARLLQQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKEAVV 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1843 618 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 1 574 - -
Acco02g1843 618 Gene3D Transferase(Phosphotransferase) domain 1 84 271 - -
Acco02g1843 618 SUPERFAMILY Protein kinase-like (PK-like) 1 323 IPR011009 -
Acco02g1843 618 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Acco02g1843 618 FunFam Serine/threonine-protein kinase Nek3 86 333 - -
Acco02g1843 618 MobiDBLite consensus disorder prediction 383 425 - -
Acco02g1843 618 ProSiteProfiles Protein kinase domain profile. 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g1843 618 Gene3D Phosphorylase Kinase; domain 1 1 83 - -
Acco02g1843 618 SMART serkin_6 4 258 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g1843 618 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Acco02g1843 618 CDD STKc_Nek 3 258 - -
Acco02g1843 618 FunFam Serine/threonine-protein kinase Nek2 1 83 - -
Acco02g1843 618 MobiDBLite consensus disorder prediction 310 335 - -
Acco02g1843 618 MobiDBLite consensus disorder prediction 383 398 - -
Acco02g1843 618 Pfam Protein kinase domain 4 257 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1843 Acco-ChrAcco02 14646992 14651605 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1843 10 259 MAP Kinase Kinase Kinase AT1G53570 31.373 3.54e-37 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Acco02g1843 Pkinase 8e-64 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1843 02 14646992 14651605 Acco02g1843 02 14646992 14651605 ECH