Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1829 ATGAATTATCCGTATACAATAAAAGAAGAGTACTTGGAACCATCTTCATCTGAAGTAGGAGCTGAGCTGGCAATGGTTCTACCTCCACAGCCAATGCAGGGACTTCATGAAACAGGACCACCTCCTTTTCTCACCAAGACATTTGATATGGTGGACGACCCTTCAACCGATCAAATAGTCTCATGGAGCAGAGGAGGATCAAGTTTTGTTGTTTGGGATCCATGTTCTTTGTCTACCAATCTCCTTCCCAGATTCTTCAAGCACAACAACTTCTCAAGCTTTGTTAGACAATTAAACACCTATGGTTTTAGAAAAATTGATCCAGACAGATGGGAGTTTTCAAACGAAGAATTCATAAGGGGACACAAGCATCTACTGAGGAACATACGAAGAAGGAGAGCACCTTCTCATCATGTTACTCCATCTTCCCAAGCACAAGGTCAATGTGTTGAAGTTGGTGGGTTTGGAGTAGAAGAAGAAATTCTACGTTTAAGGCGTGACAAGCAAGTGTTAATGATGGAGCTCGTGAAGCTTAGACAGCTACAACAGAACACCAGAGCCTACCTTCAGGCGATGGAACAGAGGTTACGAGGAACAGAAGTAAAGCAGCAACAAATGATGGCTTTCTTAGCTGGAGCATTGAAAAATCCAGCCATTCTCCACCAACTACTCCAACAGAGTAACAGAAAGGAACTAGAAGAAGCCATGAGTAAGAAAAGAAGGAGGTCAATTGATCAAGGACCAATTGATGTTGCTGAATCGAGCAGTGATAGCGAGGGAAGGAATCATGTTAAAGTTGAAGTGTCTGAACTTGAAGTTCTAGCCATGGAAATGCAAGGTCTTGGTAGGGGTAAGATAGAACAAGAAGCACTTGAATTGACAGAGAGACTGGAAAATGAACTTGATGAAGGATTTTGGGAAGAATTTTTTAGTGAGAATGTTGACGGTGAACTAGATATTCGAAGCAATGAAGGTGAAGAAGAAGAAGAACATGTAGTAGATATCAACGTCTTGGCCAAGCGCTTAGGTTACATAGGTAGCTTGAAGCCGCTGCTTCGACAAGAACCTGTTTTAGCTTTAGCAGTCAATTTTAATGCCAAGATGATCAGAAGCCGTGGAATGGACAAGAAGTAA 1134 0.4198 MNYPYTIKEEYLEPSSSEVGAELAMVLPPQPMQGLHETGPPPFLTKTFDMVDDPSTDQIVSWSRGGSSFVVWDPCSLSTNLLPRFFKHNNFSSFVRQLNTYGFRKIDPDRWEFSNEEFIRGHKHLLRNIRRRRAPSHHVTPSSQAQGQCVEVGGFGVEEEILRLRRDKQVLMMELVKLRQLQQNTRAYLQAMEQRLRGTEVKQQQMMAFLAGALKNPAILHQLLQQSNRKELEEAMSKKRRRSIDQGPIDVAESSSDSEGRNHVKVEVSELEVLAMEMQGLGRGKIEQEALELTERLENELDEGFWEEFFSENVDGELDIRSNEGEEEEEHVVDINVLAKRLGYIGSLKPLLRQEPVLALAVNFNAKMIRSRGMDKK 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1829 377 MobiDBLite consensus disorder prediction 232 247 - -
Acco02g1829 377 MobiDBLite consensus disorder prediction 232 262 - -
Acco02g1829 377 FunFam Heat shock transcription factor 1 36 133 - -
Acco02g1829 377 SUPERFAMILY "Winged helix" DNA-binding domain 39 132 IPR036390 -
Acco02g1829 377 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 29 264 IPR027725 -
Acco02g1829 377 Pfam HSF-type DNA-binding 43 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1829 377 Gene3D - 35 133 IPR036388 -
Acco02g1829 377 Coils Coil 283 303 - -
Acco02g1829 377 ProSitePatterns HSF-type DNA-binding domain signature. 82 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1829 377 SMART hsfneu3 39 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1829 377 PRINTS Heat shock factor (HSF) domain signature 43 66 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1829 377 PRINTS Heat shock factor (HSF) domain signature 81 93 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1829 377 PRINTS Heat shock factor (HSF) domain signature 94 106 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1829 Acco-ChrAcco02 14413856 14415341 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1829 21 347 HSF AT3G22830 47.480 6.16e-109 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco02g1829 HSF_DNA-bind 2.5e-31 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1829 02 14413856 14415341 Acco06g0565 06 3539836 3541864 CCT