Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1828 ATGTTTCCTGCGGCTATGTCGTCCAATTCTACTGCTTTGTCCGTAGAATCCTCTGTCTCTTCTGCTTCTAGACTTCATGACCTCTCTGGACTAAATCTCACAATTCCTCCTCAGCAGCCTCCAAAGATCAAGAAAAAGAGAAGCCTCCCAGGAAACCCAGACCCAGATGCGGAAGTGATAGCGTTATCTCCGAAGACACTTTTGGCGACCAACAGGTTTGTCTGTGAGATCTGCAACAAGGGTTTCCAGAGAGACCAGAATCTTCAACTTCATAGGAGAGGCCATAACCTGCCATGGAAGCTGAAACAAAGGAACAACAAAGAGGTTAAAAAGAGAGCCTACGTTTGTCCCGAGCCTACATGTGTTCATCACAATCCCTCGAGGGCTCTTGGGGACCTTACTGGAATTAAGAAACATTATTGCAGAAAACATGGAGAGAAGAAGTGGAAATGTGAGAAATGCTCAAAGATCTATGCAGTTCAGTCAGATTGGAAAGCTCACACTAAAACCTGTGGAACTAGAGAATATAGATGTGACTGTGGAACTCTCTTCTCCAGGAAGGACAGCTTCATAACTCATAGAGCATTCTGTGATGCATTGGCAGAAGAAAGTGCAAGACTCTCAGCAAATCAACTAGCCCCAGCCACCACCAACCCACTGGTCCAATCTCTCTTGTTATATCCAAACCAACACAGCTTCCTTAATAATCCATGGAACCCACCAATAACTCAAGAAAACCCTAACCCTAGCAACCTTCTCCAAGTGAAGCCCGAAGCTCAACATTTTCAGATGCCTCATTCGTTTCTTCAGGAACCTCCTCATCTTCATACTCACTACAAGAGCGCTCCGATAAACGCACCCTTTCGGGGCCCACACATGGCCATGCAATCTTCCTCTAACGCTGCCACCTCAGCCCACCTTTCTGCTACTGCTCTCCTTCAAAAGGCTGCCACTGTCGGGGTCACTCCGATGACGCCCCAGCCATCTCATCAGTCTCAGACTCATCACCCGACTCAGCTTAGCATGAGCGAGTTTGGTTCGGTGAACCAGCTCAACTCAGTGGTGCCTGACTATGTGAGAAGTTTCGCGACTCGGAATCTTAAGAATGAGGATTTGACAAGGGACTTCTTGGGTTTAACCGACGAGGCTAACAGTGGAGGCGGCGGTGAGAACGGCGGTGGTGCGATCAACCTGAAGAATGTCATGACGACTTTCACGGGGGACGTGTACGAGCACCACCTTCACCACTCGCTCTTCAAGTCCCGACAAGGTTTCGGATTCGTTGGGACTTCCAATGGCCCCGAGACGTGGAGTAATTATTAA 1323 0.4837 MFPAAMSSNSTALSVESSVSSASRLHDLSGLNLTIPPQQPPKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRNNKEVKKRAYVCPEPTCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHTKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARLSANQLAPATTNPLVQSLLLYPNQHSFLNNPWNPPITQENPNPSNLLQVKPEAQHFQMPHSFLQEPPHLHTHYKSAPINAPFRGPHMAMQSSSNAATSAHLSATALLQKAATVGVTPMTPQPSHQSQTHHPTQLSMSEFGSVNQLNSVVPDYVRSFATRNLKNEDLTRDFLGLTDEANSGGGGENGGGAINLKNVMTTFTGDVYEHHLHHSLFKSRQGFGFVGTSNGPETWSNY 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1828 440 Gene3D Classic Zinc Finger 53 121 - -
Acco02g1828 440 ProSiteProfiles Zinc finger C2H2 type domain profile. 73 95 IPR013087 -
Acco02g1828 440 FunFam protein indeterminate-domain 12-like 52 120 - -
Acco02g1828 440 SUPERFAMILY beta-beta-alpha zinc fingers 72 169 IPR036236 -
Acco02g1828 440 FunFam protein indeterminate-domain 5, chloroplastic-like 127 206 - -
Acco02g1828 440 MobiDBLite consensus disorder prediction 30 56 - -
Acco02g1828 440 Gene3D Classic Zinc Finger 142 207 - -
Acco02g1828 440 ProSitePatterns Zinc finger C2H2 type domain signature. 75 95 IPR013087 -
Acco02g1828 440 SMART c2h2final6 73 95 IPR013087 -
Acco02g1828 440 SMART c2h2final6 149 169 IPR013087 -
Acco02g1828 440 SMART c2h2final6 114 144 IPR013087 -
Acco02g1828 440 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 25 387 IPR031140 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1828 Acco-ChrAcco02 14401248 14404609 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1828 11 429 IDZ Gene Family AT4G02670 49.203 1.02e-121 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g1828 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1828 02 14401248 14404609 Acco06g0191 06 1313597 1316485 CCT