Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1799 ATGGCGAATCAAGTAGTCAAAGTGAAGAGGGAAACGATTGCAGCATGCATGACCTGCCCACTCTGCAACAAGTTGTTCAAGGAGGCCACCACTATATCTGAATGCCTTCATACGTTTTGCAGGAAATGCATCTATGAAAAAATTAATGATGAGGAACTGGAATGCTGCCCAATATGCAGCATTGATTTGGGATGTGTTCCTCTCGAAAAATTAAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCTCTGAAGAAAACAAAGGCAAAGGAACCAGAAGTTGTCCCGTCAGAACCATTACCAGTTAGAAGAAAGGAAAGATCACTTTCGTCTTTGGTTGTCAGCACTCCCAGAGTATCACCAAAGTCCACCATTTCAGGCAGAAGGACAAAGTCTACAAGAAAGGCCAGCACTCAACGCTCCACTAGTTTTCCCATTGAGAAGCCCATTATAAAAGAAGAAGATTCAGTGGGAGATCAACCAGAGAGTTCAAGCTCCCCTGATACCTCCAACAAGGTTGCTCAGACTACTAGACAGAACTCGTCCCCTCATGATGCTAGCCAATCTGTTCCCAATAAGGAGAAAAATAATGGGGCTGAAACTTGGGAAGCAAAATTGGATCTTTGGAAACCTTTGAATTTTTTGGTGGAGGCTGCGAGTAGGAGTAAATCTTTCAAGTCCAACATGCAAGGATGTGACGCTAAACAAGAACCTAGTCAAATAAATGAGAGTGATTCTCTAGTACAAAAGTCCAAAATTAAGGACAACAGACGAAAGCCAAAGGTTGAGGATGAAAAGATCAGCGCAGATCCTGCTTCTACTGATACAGCAAAAACCAATAAATTGCGCAGAAATCGCCGCAAAAAGGAACCTGTTTTGGGCGAATCAAGTATATCACCCCAAGCTGTGCTGGATGCAAACAGTGCTAAAATGAAAGAAAGAACTGCTTCAATATGGTTCTCCTTAGTAGCTTCTGAAGACCAGGACAGAGATTCGTCACTACACCAAATTTCTGCTAGTTACTTAAGAATAAAGAATGGAAACATGCCAGTCTCATATATCCAAAAGTACCTGATGAAGAAATTAGATCTGACCAGTGAAGATGAGGTGGAGATTAAATGTATGGGACAACCAGTGGTCCCTACATTGCAGCTAAATAACTTGATCGACTTGTGGCTGCAAACAACATCAACATCACAGAGAATCCCAGCAGCCATTGGATCATCAGCTAAAGATTTTGTTATGGTCCTCACCTATGCTCGCAAGGCCGCGGCCCCACTTCCTTGA 1296 0.4298 MANQVVKVKRETIAACMTCPLCNKLFKEATTISECLHTFCRKCIYEKINDEELECCPICSIDLGCVPLEKLRPDHSLQDVRAKVFPLKKTKAKEPEVVPSEPLPVRRKERSLSSLVVSTPRVSPKSTISGRRTKSTRKASTQRSTSFPIEKPIIKEEDSVGDQPESSSSPDTSNKVAQTTRQNSSPHDASQSVPNKEKNNGAETWEAKLDLWKPLNFLVEAASRSKSFKSNMQGCDAKQEPSQINESDSLVQKSKIKDNRRKPKVEDEKISADPASTDTAKTNKLRRNRRKKEPVLGESSISPQAVLDANSAKMKERTASIWFSLVASEDQDRDSSLHQISASYLRIKNGNMPVSYIQKYLMKKLDLTSEDEVEIKCMGQPVVPTLQLNNLIDLWLQTTSTSQRIPAAIGSSAKDFVMVLTYARKAAAPLP 431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1799 431 ProSiteProfiles Zinc finger RING-type profile. 19 60 IPR001841 -
Acco02g1799 431 ProSitePatterns Zinc finger RING-type signature. 35 44 IPR017907 -
Acco02g1799 431 SUPERFAMILY RING/U-box 14 83 - -
Acco02g1799 431 CDD RING-HC_PCGF 17 59 - -
Acco02g1799 431 SMART ring_2 19 59 IPR001841 -
Acco02g1799 431 MobiDBLite consensus disorder prediction 91 108 - -
Acco02g1799 431 MobiDBLite consensus disorder prediction 227 250 - -
Acco02g1799 431 MobiDBLite consensus disorder prediction 227 299 - -
Acco02g1799 431 MobiDBLite consensus disorder prediction 251 274 - -
Acco02g1799 431 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 104 IPR013083 -
Acco02g1799 431 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 1 426 IPR044807 GO:0004842
Acco02g1799 431 Pfam Zinc finger, C3HC4 type (RING finger) 19 59 - -
Acco02g1799 431 MobiDBLite consensus disorder prediction 91 201 - -
Acco02g1799 431 MobiDBLite consensus disorder prediction 163 199 - -
Acco02g1799 431 Gene3D - 302 404 - -
Acco02g1799 431 MobiDBLite consensus disorder prediction 112 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1799 Acco-ChrAcco02 14142040 14147287 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1799 2 348 C3H Transcription Factor Family AT2G30580 50.575 1.03e-105 315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1799 02 14142040 14147287 Acco06g0593 06 3758652 3764170 CCT
Acco02g1799 02 14142040 14147287 Acco02g1799 02 14142040 14147287 ECH