Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1750 ATGGATTCAGATTCCTTCTCCTTGCAATACACACAACATGAGTGCTGCCTTCTAGATCCCTTTGTTTCTGAAGCATCATCAATGTCCTTCTGGGACGACCTCCTACTCTTCAACGAAAACGACACCAACTTCTTCTCACAAGATCATACCATGATGTCCATGTTTTCCGATGCTGTAGCCTCCAAGGATTCATCATCGTCGACGGAATCCAATTCCTCAGGCTCGGAGGCAGTGCAAGAAGTCTCCTCCTGCTCCAAAATGGAAGAGAAAGAAGAAAAGAGGGTGTACAGAGGAGTGAGGAGGCGGCCGTGGGGGAAGTACGCGGCGGAGATAAGGGACTCCACCAGAAAAGGGGTGAGAGTTTGGATCGGAACATTCGACACGGCAGAGGAAGCAGCCTTGGCGTATGATCAGGCAGCATTATCGACACGAGGGTCTCAGGCAGTACTCAACTTCCCAGAGGAAGTGGTGAGAGAATCGCTGAGGAAGATGCCTCACAAGACATGGCAAGAAGCTTGCTCTCCGGTGTTAGCCCTCAAGAAGAAACACACTTCCACACGAAAGTCAAAGTCAAAGTCAAACTCCAGAACTCATCCTCTCGCCAAGACCCAAATCCAATCTGCTCATCATCAGCCTGCGTTGGAGCTGGAGGATTTGGGAGCCGACTATCTCGAACAACTTTTGACTCTCACGTGTCACTGA 702 0.5 MDSDSFSLQYTQHECCLLDPFVSEASSMSFWDDLLLFNENDTNFFSQDHTMMSMFSDAVASKDSSSSTESNSSGSEAVQEVSSCSKMEEKEEKRVYRGVRRRPWGKYAAEIRDSTRKGVRVWIGTFDTAEEAALAYDQAALSTRGSQAVLNFPEEVVRESLRKMPHKTWQEACSPVLALKKKHTSTRKSKSKSNSRTHPLAKTQIQSAHHQPALELEDLGADYLEQLLTLTCH 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1750 233 PANTHER DNA-BINDING DOMAIN 54 227 IPR044808 GO:0003700|GO:0009873
Acco02g1750 233 SMART rav1_2 95 159 IPR001471 GO:0003700|GO:0006355
Acco02g1750 233 Pfam AP2 domain 95 145 IPR001471 GO:0003700|GO:0006355
Acco02g1750 233 PRINTS Ethylene responsive element binding protein signature 96 107 IPR001471 GO:0003700|GO:0006355
Acco02g1750 233 PRINTS Ethylene responsive element binding protein signature 119 135 IPR001471 GO:0003700|GO:0006355
Acco02g1750 233 MobiDBLite consensus disorder prediction 181 195 - -
Acco02g1750 233 SUPERFAMILY DNA-binding domain 95 154 IPR016177 GO:0003677
Acco02g1750 233 MobiDBLite consensus disorder prediction 62 85 - -
Acco02g1750 233 Gene3D AP2/ERF domain 95 155 IPR036955 GO:0003700|GO:0006355
Acco02g1750 233 MobiDBLite consensus disorder prediction 196 210 - -
Acco02g1750 233 FunFam Ethylene-responsive transcription factor 2 94 154 - -
Acco02g1750 233 CDD AP2 96 154 IPR001471 GO:0003700|GO:0006355
Acco02g1750 233 ProSiteProfiles AP2/ERF domain profile. 95 153 IPR001471 GO:0003700|GO:0006355
Acco02g1750 233 MobiDBLite consensus disorder prediction 181 211 - -
Acco02g1750 233 MobiDBLite consensus disorder prediction 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1750 Acco-ChrAcco02 13564296 13564997 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1750 43 232 AP2-EREBP Transcription Factor Family AT2G31230 43.128 2.63e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco02g1750 AP2 6.4e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1750 02 13564296 13564997 Acco06g0624 06 4023330 4024892 CCT
Acco02g1750 02 13564296 13564997 Acco02g1750 02 13564296 13564997 ECH