Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1708 ATGGAGGACTCTGGGAATCATGTTAACAGAAACAGTAAATTTTTGAACCCATGGATGCTTCAGTTCCAGAAAATGGTTCTTGAACTCAAGTGCCCTCTCTGTTTAAACTTGTTCAAAAAGCCCATGTTACTTCCATGCAACCACATATTCTGCAGCCCCTGCATAACTGATTGCTCAAGGCCTAGTTCAGAATGTGCTGTCTGTAATATTCATTATGCTCAAAGAGATCTGAGGTTTCTGCCTATTGTGGAAAACATGATTGCAATTTTTAAAAGCCTGGATGCTGCCTTTTATGCCAATCTATCTCATAATCGTTCTCCTGATGAGCTGCCAGTTTTGGAGCGGGGTGAAACCATATTAAATGCGACTTTTAATTATAGAATGTCCAAGGAGCCATCCAAAACACCTCTAGGAGATAATCTGCATAGGGAGCAGTTAGTCTATTCACAAACAATGGCTGAATGTGTTATGGATCCCTTCAGATTAGACCATTCTATAGATGTGGATATTGGCAAGAATCACAAATATGAGAAGACTGGTAATGCTGGGCATGGCAAAGATAAGACGTTTGATGTTTCTCGAAAGGAAGAGATTCTGATGAAATGTTCTCAACTGGATGGAAGGGGCCATGAAGATCGTGGGCTTGTGGAAATGGACATAAATCAAATTACTCAATCTTCACCAGGCAGCCCTCCATTTTGTGATACAAAAGGTTCAGACAATGATTGTAGTGATGGCGTCAGTGAACATCGCATGCCTGCTGAGAGATTAGAAAGTTCTTCATCAAAGAGAGCAAGCAAAGAAAATGAAATATTGGAAAAAAGGATTCAGTTGAGGTCTGAAAGCTCTGCCTCTGAAACAGAGGGTCTTATGAGAGACTCCAAGAGGCCAAAAAACCTTTCACACGACAATGATGGCATTCAACCTAATGTTACCCTTCAAAGTAAGCCCACCACTTCTGAATGTAACTCAGACCCTAAATCTAGGATTGACCTGGATTCATGTTCAAATACAAGCGTGTGCTCTTTTTGCCAGTCTTCTAGAACCTCAGAGGTTACTGGGCCGATGTTGCATTATAAAAATGGAGATTTGCTGACGGGAATTGCAGCACTCCAACCAAATGTCATACATGTGCATAAACTTTGCATTGAATGGTCACCTCAAGTGTATTTTGTTGATGAATCTGTTAAAAATTTAAAGGCAGAAGTGGCAAGGGGAGCAAAGCTCAAATGCAGCAAATGTGGCCAAAAGGGGGCTGCTCTTGGCTGCTACGTTAGATCCTGTAGGAGAACTTATCATGTTCCTTGTGCAATGGAAATCTCAGCTTGCCGTTGGGATGATGAGGAATATCTAATGCTCTGTCCAGCTCATTCTCATGTGAAATTTCCACATGAGAAATCCAGATCTAAGAAACAGGGCTCCCAGAAAAATCCTTTGTTGTCTCATTTGGCATCTAAGCCGTCAAAACCCCTGATAGTTTTGTCAGATGACAGTAAACATGTGGTTTTCTGTGGATCTGCTCTGTCAACAGATGAAATGATACACTTGATCAATTTGGCCAGTAGAATTGGTGCTACTGTTACCAAGTTTTGGACGCCAGATGTGACACATGTGGTTGCAGCAACTGATTCAAACGGATCATGTGCCAGGACACTTAAAGTCCTTATGGGTATTTTGAATGGACAGTGGATTCTTAAGATGGACTGGGTAACTGCAAGCATGGAGGTGATGCATCCTGTGGAAGAAGAGCCGTTTGAAATAAGTCTTGATAACTATGGCTGTCAAGGTGGCCCAAAAGCTGGCAGACTTAGGGCATTGGTCAATGCGCCCAAGCTTTTTAGCGGCTTTAGTATGTACTTTTCTGGTGACTACATGTCAGATTATTTGGAGGATCTTGTAGACTTGGTTGTAGCAGGAGGAGGTACTGTTTTGGAAAGCAAGGAAGAATTGCAAATAAAAGGTCATGAATGCAAGGAGGGCTCAAAGCTGATTGTTTACAATCTTGATCCCCCACAAGGGAGCAGGTTGGGGGATGAAGTTACAATTCTTTGGGAGAGATTAAACGAGGCAGAGGATTTAGCTGCTACTTCTGGCTCACAAGTCGTTGGTCACACGTGGATTTTGGAGTCAATTGCTGCATGCAAGTTACAGCCTTTTGTTAGCTAG 2166 0.4224 MEDSGNHVNRNSKFLNPWMLQFQKMVLELKCPLCLNLFKKPMLLPCNHIFCSPCITDCSRPSSECAVCNIHYAQRDLRFLPIVENMIAIFKSLDAAFYANLSHNRSPDELPVLERGETILNATFNYRMSKEPSKTPLGDNLHREQLVYSQTMAECVMDPFRLDHSIDVDIGKNHKYEKTGNAGHGKDKTFDVSRKEEILMKCSQLDGRGHEDRGLVEMDINQITQSSPGSPPFCDTKGSDNDCSDGVSEHRMPAERLESSSSKRASKENEILEKRIQLRSESSASETEGLMRDSKRPKNLSHDNDGIQPNVTLQSKPTTSECNSDPKSRIDLDSCSNTSVCSFCQSSRTSEVTGPMLHYKNGDLLTGIAALQPNVIHVHKLCIEWSPQVYFVDESVKNLKAEVARGAKLKCSKCGQKGAALGCYVRSCRRTYHVPCAMEISACRWDDEEYLMLCPAHSHVKFPHEKSRSKKQGSQKNPLLSHLASKPSKPLIVLSDDSKHVVFCGSALSTDEMIHLINLASRIGATVTKFWTPDVTHVVAATDSNGSCARTLKVLMGILNGQWILKMDWVTASMEVMHPVEEEPFEISLDNYGCQGGPKAGRLRALVNAPKLFSGFSMYFSGDYMSDYLEDLVDLVVAGGGTVLESKEELQIKGHECKEGSKLIVYNLDPPQGSRLGDEVTILWERLNEAEDLAATSGSQVVGHTWILESIAACKLQPFVS 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1708 721 SUPERFAMILY BRCT domain 612 718 IPR036420 -
Acco02g1708 721 ProSiteProfiles Extended PHD (ePHD) domain profile. 338 458 IPR034732 -
Acco02g1708 721 Gene3D BRCT domain 609 714 IPR036420 -
Acco02g1708 721 SMART ring_2 31 68 IPR001841 -
Acco02g1708 721 SMART ring_2 411 457 IPR001841 -
Acco02g1708 721 FunFam Breast cancer type 1 susceptibility protein homolog 498 604 - -
Acco02g1708 721 SUPERFAMILY BRCT domain 501 588 IPR036420 -
Acco02g1708 721 Pfam BRCA1 C Terminus (BRCT) domain 500 573 IPR001357 -
Acco02g1708 721 Pfam RING-type zinc-finger 31 61 IPR027370 -
Acco02g1708 721 Pfam PHD-like zinc-binding domain 379 458 - -
Acco02g1708 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 16 101 IPR013083 -
Acco02g1708 721 SMART PHD_3 410 458 IPR001965 -
Acco02g1708 721 MobiDBLite consensus disorder prediction 223 327 - -
Acco02g1708 721 CDD BRCT_Bard1_rpt1 501 580 - -
Acco02g1708 721 ProSiteProfiles BRCT domain profile. 501 587 IPR001357 -
Acco02g1708 721 ProSitePatterns Zinc finger RING-type signature. 46 55 IPR017907 -
Acco02g1708 721 ProSiteProfiles Zinc finger RING-type profile. 31 69 IPR001841 -
Acco02g1708 721 SMART BRCT_7 610 714 IPR001357 -
Acco02g1708 721 SMART BRCT_7 491 577 IPR001357 -
Acco02g1708 721 SUPERFAMILY RING/U-box 28 91 - -
Acco02g1708 721 Gene3D BRCT domain 498 603 IPR036420 -
Acco02g1708 721 ProSiteProfiles BRCT domain profile. 608 721 IPR001357 -
Acco02g1708 721 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 11 286 IPR031099 GO:0006281|GO:0006974
Acco02g1708 721 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 335 460 IPR013083 -
Acco02g1708 721 MobiDBLite consensus disorder prediction 242 302 - -
Acco02g1708 721 MobiDBLite consensus disorder prediction 303 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1708 Acco-ChrAcco02 13120884 13125969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1708 531 644 Core DNA Replication Machinery Family AT4G02110 30.252 1.37e-06 50.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1708 02 13120884 13125969 Acco02g1708 02 13120884 13125969 ECH