Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1692 ATGCCACTCGGCCACGTGGCGAATCACGGCCACCGCCGGAATGGGAATCGCTCACCCCGAACGCCGAAGCTGCCTGTGAATGGTTCGGAAGTCATAGTCCGGTCCCACACTTTGTCGGCTTGTCGTTTGGAGCGTCTGTTTGCGGTTGGTCTTCTTCTTTACCTTGTGCTGGCACTTCGATCCATATTGCGAGCGGTACAGGGTGGTTCTACTGGTGGATCAATGTCTACGCTGTCAAGGGAAGATAATTTGGTTTCGTCTTCGGAGGATTCTTCATGCCCAGACGAATCTGAGCTTGAATTAGGTCTTGGCTTAAGCTTTTCTCGTCGTCCTGGGCTGAAGTCCCAACCACCTTCCACGAATCAATGTGCTAGAATTTTAACGGCTAAAGATTTTCCTTCTATGGTTTCTTCTCGTTCTGCAACTTCACTAGCCTCGTCAACCTCTTCCTCCTCTTCTCCTTCCTCTGTGACCAGGCCTAACGCCACTGCTGGCATCAAGAGAACTGCCGATTCTGTTGTTGCTACTAATGGCCCCAGTCAGGTTGTGGGATGGCCCCCCGTTGGAGCATATCGAATGAATAGCTTTAGCAATCATGCAAAGTCACCTGCCACTAATGTGTTCAACTCAGCGACTGAGAAAAGTATGGACAATGGTACAGAGGCTAGGAAGAGTACTGATAATGGCATCGATAATAGCAATGTTAGTGCCAAAGGTAAAGGACACCTGAAGAGTACCTGGTTTGTGAAGGTAAATATGGATGGGTTACCGATTGGAAGGAAGGTTGATTTGAGGGTTCACAATTCCTATGAAAGCTTAGCACTTACTTTAGAGGAGATGTTCGATGACCACATTGCAGCTGTTTCGAGTAGAGTTGGATCAAATGGGGAAGAACATGGCAGAGCAGAAAGACGGTCAACATTGCTGGATGGATCTTCCAAGTTTGTACTTACTTATGAAGACAAAGATGGAGACTGGATGCTTGTCGGAGATGTACCCTGGGGGATGTTTCTTAGCTCTGCGAGGAGGCTAAGAATCATGAGAACATCTGAGGCCAATGGACTGGCACCAAAATATGAAGAAAAAAACAGCAGGCAGAGAAGTTAG 1107 0.4779 MPLGHVANHGHRRNGNRSPRTPKLPVNGSEVIVRSHTLSACRLERLFAVGLLLYLVLALRSILRAVQGGSTGGSMSTLSREDNLVSSSEDSSCPDESELELGLGLSFSRRPGLKSQPPSTNQCARILTAKDFPSMVSSRSATSLASSTSSSSSPSSVTRPNATAGIKRTADSVVATNGPSQVVGWPPVGAYRMNSFSNHAKSPATNVFNSATEKSMDNGTEARKSTDNGIDNSNVSAKGKGHLKSTWFVKVNMDGLPIGRKVDLRVHNSYESLALTLEEMFDDHIAAVSSRVGSNGEEHGRAERRSTLLDGSSKFVLTYEDKDGDWMLVGDVPWGMFLSSARRLRIMRTSEANGLAPKYEEKNSRQRS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1692 368 SUPERFAMILY CAD & PB1 domains 243 347 - -
Acco02g1692 368 MobiDBLite consensus disorder prediction 1 26 - -
Acco02g1692 368 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 98 354 IPR003311 GO:0005634|GO:0006355
Acco02g1692 368 Gene3D - 242 361 - -
Acco02g1692 368 MobiDBLite consensus disorder prediction 209 237 - -
Acco02g1692 368 ProSiteProfiles PB1 domain profile. 246 351 IPR000270 GO:0005515
Acco02g1692 368 MobiDBLite consensus disorder prediction 69 92 - -
Acco02g1692 368 MobiDBLite consensus disorder prediction 69 97 - -
Acco02g1692 368 FunFam Auxin-responsive protein 241 359 - -
Acco02g1692 368 Pfam AUX/IAA family 98 358 IPR033389 -
Acco02g1692 368 MobiDBLite consensus disorder prediction 143 164 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1692 Acco-ChrAcco02 12997685 13001422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1692 250 358 B3 DNA Binding Superfamily AT1G59750 33.028 2.43e-12 66.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Acco02g1692 AUX_IAA 2e-61 CL0072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1692 02 12997685 13001422 Acco06g0664 06 4299729 4302621 CCT
Acco02g1692 02 12997685 13001422 Acco02g1692 02 12997685 13001422 ECH