Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1666 ATGAGGATTTCAATTATGATATTGATTGAAGATTTCAATTATGATATTGATGAGAGAGTCGTTGCACCTGAATTTTCTTTTACTACCGTTTTGCTCGACGACAGAAGCGGTATGAATCACCGTGTTCCATATTTCGAATTTGAGATGGATGATGATGAATATCCGATGCCCACGGCTTCCGGGTTGCCCCGCCAAAAGAAGCCCTCCGTCCCCGAGGACGATATCATGGAGCTCTTGTGGCAAAACGGCCAGGTTGTGATGCAGAGCCAGAATCAACGACCTCAGAGAAAACCGCCGCCAGAGAGGTACCCCGACAGCGTGATTCCCGCCGGCGCATCGACAGCGAGGGAGATTCGACCCTCGCAACAATTAGAACAACACTATCATCAGAATCAACATATCTTCATGCAAGAAGATGAAATGATTTCATGGCTTCACTATCCCACCGTAGATGATCCTCCCTTGGATCATAATTTCTGCGCCGACATCCTCTACCCGCAGCCGCCCACTGTCAATAACAGTTTCATGCAAAATCCTGACCGTGCTTCTCAAGCAACGGAACTCCGGCAGCTATCGAGGTCGGTCGCTCCAAGGCCGCCGATTCCACTTCCGCGGAAGCCGGAGCATATGCAGACGATGATGCCGAACTTCGCGCACTTCTCGAAACACAATGCAAGAGTTGAAGCAGGACCGTCAAGTTCGAAGACGGCGATGAAGGAATCGACGGTCGTAGATTCATGCGACACTCCGGCCTTGATGGCGTCAGTTTCCAGAGTCTCGGAGACTTTCAGAAACACGGCGGAGCCAACAGAGCGCGATGAGGCTCTTGGAACGATGAGCACTGCCGGCGCTGCGGCGCCTTCGTCCACATCCGTCGGCGGAGATACCGGATTCAGGGAGACGACGACGTGCGAGATGATGTCGACGTCATCGCCGGGAGGTTCAAGCGGGGGTTTTGAACCGGCAAGGAGACCACCGGATGAAGATCGGAAACGGAAGGGCCGGGAAGCCGATGAATCGGAGTGCCACAGCGAGGATGTCTACGTTGAATCTGCTGAAGCCAAGAAACAAAATTGTGGATCATCATCTACTAAAAGATCACGTGCTGCAGAGGTTCATAATCTCTCAGAGAGGAGGCGTCGAGATAGGATTAATGAAAAGATGAGAGCCTTGCAAGAACTTATCCCTCGCTGTAATAAGTCCGACAAAGCTTCAATGCTGGATGAAGCAATTGAATACTTGAAGTCACTGCAGTTACAAGTGCAGATGATGTCCATGGGATGTGGGATGGTACCGATGATGTTTCCCGGAATCCAACAGTATATGCCGACAATGGGGATGGGGATGGGGATGGGTATGGGCATGGAAATGGGAATGAATAGGCCATTAATGCCATTTCCCAATATGTTAGCTGCATCTGCTATGCCGGCGGCGGCGGGGGCGGCTCAGTTGGGACCAAGGTTCCCTATGCCCCCTTTCCAAATGCCCCATGCCCCTCAGCCTGATTCATCCAGAATGCAAGCGGCAGCTCCTAATCAACCGGAAAATAATACGCTTCCTTCTCTTGTCACACCTGATCCTAATCAGTCACGGATCCCAAACTTTAATGATCCTTATCAACAATGCCTTGGTCCCCACCCCCAGATGCATCTACAGTTCATGCAGAACCAGATAATGAACAATCCAACTGTCAGCAAATCAAGTACCAGTAAGAGCCATGAAAATGCAGAAAATAATCAACCAGAGTAA 1749 0.5043 MRISIMILIEDFNYDIDERVVAPEFSFTTVLLDDRSGMNHRVPYFEFEMDDDEYPMPTASGLPRQKKPSVPEDDIMELLWQNGQVVMQSQNQRPQRKPPPERYPDSVIPAGASTAREIRPSQQLEQHYHQNQHIFMQEDEMISWLHYPTVDDPPLDHNFCADILYPQPPTVNNSFMQNPDRASQATELRQLSRSVAPRPPIPLPRKPEHMQTMMPNFAHFSKHNARVEAGPSSSKTAMKESTVVDSCDTPALMASVSRVSETFRNTAEPTERDEALGTMSTAGAAAPSSTSVGGDTGFRETTTCEMMSTSSPGGSSGGFEPARRPPDEDRKRKGREADESECHSEDVYVESAEAKKQNCGSSSTKRSRAAEVHNLSERRRRDRINEKMRALQELIPRCNKSDKASMLDEAIEYLKSLQLQVQMMSMGCGMVPMMFPGIQQYMPTMGMGMGMGMGMEMGMNRPLMPFPNMLAASAMPAAAGAAQLGPRFPMPPFQMPHAPQPDSSRMQAAAPNQPENNTLPSLVTPDPNQSRIPNFNDPYQQCLGPHPQMHLQFMQNQIMNNPTVSKSSTSKSHENAENNQPE 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1666 582 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 368 417 IPR011598 GO:0046983
Acco02g1666 582 CDD bHLH_AtPIF_like 368 431 IPR047265 -
Acco02g1666 582 MobiDBLite consensus disorder prediction 355 369 - -
Acco02g1666 582 Gene3D - 363 426 IPR036638 GO:0046983
Acco02g1666 582 MobiDBLite consensus disorder prediction 505 534 - -
Acco02g1666 582 MobiDBLite consensus disorder prediction 322 352 - -
Acco02g1666 582 MobiDBLite consensus disorder prediction 483 534 - -
Acco02g1666 582 MobiDBLite consensus disorder prediction 557 582 - -
Acco02g1666 582 MobiDBLite consensus disorder prediction 282 316 - -
Acco02g1666 582 MobiDBLite consensus disorder prediction 177 191 - -
Acco02g1666 582 Pfam Helix-loop-helix DNA-binding domain 372 418 IPR011598 GO:0046983
Acco02g1666 582 SMART finulus 374 423 IPR011598 GO:0046983
Acco02g1666 582 MobiDBLite consensus disorder prediction 260 382 - -
Acco02g1666 582 FunFam Basic helix-loop-helix transcription factor 363 426 - -
Acco02g1666 582 MobiDBLite consensus disorder prediction 177 202 - -
Acco02g1666 582 PANTHER TRANSCRIPTION FACTOR PIF3 64 515 IPR044273 GO:0003700|GO:0006355
Acco02g1666 582 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 366 434 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1666 Acco-ChrAcco02 12744953 12749992 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1666 38 423 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G20180 42.356 2.63e-69 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco02g1666 HLH 2.1e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1666 02 12744953 12749992 Acco02g1666 02 12744953 12749992 ECH