Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1648 ATGGCTTTCTTCTCTGGAATCCGCCGCCTTATTCGCGATCAATCTTCTTCCTCGTCGATTCTTTATTCGCAACTTACTTCGATTCGTCTTACTTCAACCCTCACGTCCCCCAGGCTTTTCGTCAGCGGTCTATCAAGACTGACGACAGATGAAAAACTAAAGGAAGCATTTACTCCTTTTGGGCAGCTGATTGAAGCTAAGGTCATAACTGATAGAATCTCTGGAAGGTCAAAGGGATTTGGTTTTGTGACTTATGCGAGCATAGAAGATGCTGAAAAGGCCAAAGAAGGAATGAATGCTAAGTTTCTGGATGGATGGGTTATATTTGTTGATCCTGCCAAACCAAGGGAACCTAAACTGCAATCACAGCCTCAGCCCTCTGAAACAGGTTTTACAGTGAACAAGACGGTTGGATGGTGTGGTTGA 426 0.4437 MAFFSGIRRLIRDQSSSSSILYSQLTSIRLTSTLTSPRLFVSGLSRLTTDEKLKEAFTPFGQLIEAKVITDRISGRSKGFGFVTYASIEDAEKAKEGMNAKFLDGWVIFVDPAKPREPKLQSQPQPSETGFTVNKTVGWCG 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1648 141 PANTHER NUCLEOLAR PROTEIN 8 20 140 - -
Acco02g1648 141 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 39 105 IPR000504 GO:0003723
Acco02g1648 141 SUPERFAMILY RNA-binding domain, RBD 36 127 IPR035979 GO:0003676
Acco02g1648 141 FunFam RNA binding protein 24 135 - -
Acco02g1648 141 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 37 115 IPR000504 GO:0003723
Acco02g1648 141 Gene3D - 12 125 IPR012677 -
Acco02g1648 141 SMART rrm1_1 38 111 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1648 Acco-ChrAcco02 12629592 12633580 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1648 36 139 Eukaryotic Initiation Factors Gene Family AT3G16380 28.846 1.39e-07 47.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1648 02 12629592 12633580 Acco02g1648 02 12629592 12633580 ECH