Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1625 ATGGAAGAAAGCGCAACCATATTGGCTGCACTCCCCGCCCTCCCTCCTTCTCACCTCTCCGATCTTACCCACTCCATCGCCTCCACCGTCCACCACCACAACCTCCGCCTCACCTCCGTCCTCTCTTCTCAATCCCTCTTCTCTCTCGCCCTCAACTACCTCCACTCTCTCTCTCTTCCCCAAAAATCCCTCCTCATTGCCCGCCACCTCCTCTCTTCCCTCCACACCCTCACGCGCCACCTCGAGCCGCCGCCGCCTCCATTGTCCACTGTCATGAGACAGCGTGACCTCGACGCCGTTCTTCTCCTCCTCTTATTCTGCGATGCGCACCAGCACCACCCACAAGTTCTCGAAGTGCCAGTTCGCGATTGGCGCAGGAATCTGAGCAGGCTCCTCGCCGATAAATTGTTGGGAATTTCTTCTACTCCTATCGGGGAATGCAGCGCCGCGATTTTGATTCCGTATATTGAGATGGTGATACGGTGCTGGAGGCTGGTGGGTTCAATGGGATGCGGCGGAGAAAAGGGCGGAGGGGAAGTGGCGGCGTCGAGGGCGGCGGTGGTGGCGCTGCCGAGTGTGGAAGTGAGGGTGGGGGGAAGCGAGTGCGTGATATGCAAAGAGGAGATGCGGGTGGGGAGGGATGTGTGCGAACTGCCATGTCAGCACTTGTTTCATTGGAATTGCATATTGCCGTGGCTGAGTAAAAGGAATACGTGTCCTTGCTGCCGGTTCAAGCTGCCCTCCGATGATGTTCTTGGAGAGATCCAACGGCTGTGGGAGGTCTTGGTCAAAACGTGTGGAGCAGAGCGGGGCGATTGA 819 0.5788 MEESATILAALPALPPSHLSDLTHSIASTVHHHNLRLTSVLSSQSLFSLALNYLHSLSLPQKSLLIARHLLSSLHTLTRHLEPPPPPLSTVMRQRDLDAVLLLLLFCDAHQHHPQVLEVPVRDWRRNLSRLLADKLLGISSTPIGECSAAILIPYIEMVIRCWRLVGSMGCGGEKGGGEVAASRAAVVALPSVEVRVGGSECVICKEEMRVGRDVCELPCQHLFHWNCILPWLSKRNTCPCCRFKLPSDDVLGEIQRLWEVLVKTCGAERGD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1625 272 Pfam Ring finger domain 201 243 IPR001841 -
Acco02g1625 272 SUPERFAMILY RING/U-box 198 249 - -
Acco02g1625 272 ProSiteProfiles Zinc finger RING-type profile. 202 243 IPR001841 -
Acco02g1625 272 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 146 247 - -
Acco02g1625 272 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 176 249 IPR013083 -
Acco02g1625 272 SMART ring_2 202 242 IPR001841 -
Acco02g1625 272 CDD RING-H2_PA-TM-RING 201 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1625 Acco-ChrAcco02 12425725 12426543 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1625 2 265 C3H Transcription Factor Family AT5G02750 51.449 1.46e-81 245