Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1577 ATGGGGTGTATTCTACACAGCCCGCTCAGTAGTAGGCCCGATAAGTTTTCCAATCTTCGCTATTTAAACATCCCGTTGAACCCCATAGTTAGGGTTTCTTGGTGCTCGTGGCAGCTGCTCACATTTCTTCAACGGCGAACGGTAGAGGAGGAGAAGGACCAAGTATCCGTAACCATGGGGAAGACCAGAGGTATGGGAGCTGCCCGCAAGCTGCGGTCCCACCGCAGGAGGCAAAGGTGGGCTGATAAGGCATACAAGAAGTCTCATCTTGGCAATGAATGGAAGAAACCTTTTGCTGGGTCTTCCCATGCAAAGGGTATTGTTCTTGAAAAGATAGGTATTGAGGCTAAGCAGCCAAACTCTGCCATTCGTAAGTGTGCTAGAGTTCAACTTATCAAGAATGGGAAGAAGATTGCTGCCTTTGTCCCTAACGATGGTTGCTTGAACTACATAGAAGAGAATGATGAAGTCTTGATAGCTGGATTTGGACGAAAGGGTCATGCCGTGGGTGATATTCCTGGTGTCAGATTCAAGGTCGTGAAGGTATCTGGTGTCTCACTCCTTGCCCTCTTCAAGGAAAAGAAAGAGAAGCCGAGGTCTTAA 603 0.4793 MGCILHSPLSSRPDKFSNLRYLNIPLNPIVRVSWCSWQLLTFLQRRTVEEEKDQVSVTMGKTRGMGAARKLRSHRRRQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1577 200 CDD Ribosomal_S23 84 197 IPR005680 GO:0003735|GO:0006412|GO:0015935
Acco02g1577 200 NCBIfam 30S ribosomal protein S12 64 199 IPR005680 GO:0003735|GO:0006412|GO:0015935
Acco02g1577 200 ProSitePatterns Ribosomal protein S12 signature. 117 124 IPR006032 GO:0003735|GO:0005840|GO:0006412
Acco02g1577 200 FunFam 40S ribosomal protein S23 83 200 - -
Acco02g1577 200 Pfam Ribosomal protein S12/S23 89 199 IPR006032 GO:0003735|GO:0005840|GO:0006412
Acco02g1577 200 SUPERFAMILY Nucleic acid-binding proteins 78 198 IPR012340 -
Acco02g1577 200 PANTHER 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER 58 200 IPR006032 GO:0003735|GO:0005840|GO:0006412
Acco02g1577 200 Gene3D - 83 200 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1577 Acco-ChrAcco02 12070041 12071688 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1577 59 200 Cytoplasmic Ribosomal Protein Gene Family AT5G02960 95.070 5.42e-95 271