Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1555 ATGGGACATAGACATTTATATAGCATATCTCAGATGTTTGGGAGTGAGCATGAGCAGAATTGGAATTATATGCATCCTGATCAACACAATGTGCAACTAGGTAGGGCTAGCACTTCAGAGAATGGTTCTTTTATTCATCCACTAGAAAATATGTCTATAAATGGCAGCTCTATGGCTGCTCCTTGGAACAATGCCACTATGTCAAATGGATATGCATCCTCAAGTATCAACATTGAATTACCCCCTTGTCAATCAGATGCATCCAGATCTTCTCATGATCATTTTTTGCGTTCATCAAATCCTGGAGCCTTTTTTGCAGTTTCTGAAAACTATGCTTGCCAGCCTTCTTCCAATTATGATAGACAAACATTTCATGTTACTGATGGTGGTTTCTTTGATTTTACAATGGGAAGCGGGAGAGGTCCTCAGAAGCGGAAGAGCCCTGGAATTCCTTCAGTGTCTGAGAGAGGCAGCTCAAGTAGATATTTCGGTGCGGGAAGCTCAACCGATCTCCCTATATCTTCAGAAATAATAAGGCAGGAGAAGCCAAGCTTGGATTCTCAATATCTGCCTTGGGATCATGTTACTATGACACCCCCCTTCAGAGGCAGTGGCCTTTCAATCAGGAGTGATGGTCCTTTAAGGAATGTTAGAAGTCGTTCTGCACTTGATTTGGAATCCAACCTTGCTAGGACACATTTATCTGACAACCATTTGCACAACTTATCTTTTGGCCCGTCCACTGACCATTCTAGTTCAGTGGGTCTTTCTGGTCATAGTTCTAGTACTATGACTAGGGACTGGAGCCAGATGAACATGTCTCCTGCTCAGGGGAGTGTATTAATATCTGAATCAAGTGGATATAATCATGAGCCAAGTCGCTTGCTAGTTGGAAGCGGTGTTAGCAATGCTTCAGTGGATGCTGGGAGTTACCATCATGAATATAATGCGAGCATAAATCCTACTGTTCCTCAAAGTTTTCACAGTAACCCTACTCACCCTGGTAGGGGAGTTCGAAGTAACTATTCCCAAAGATCTGCTCCAACACCAACTCCAACTTTTAGAGCCTCTTCAAGCTCTCATGTGGGACATATGGTGCCTTCAGATGGTGGATTGTTCATGGGAGCTGAAGGTTTTATATCTAGACATCCAAGATCCTTGACTGCCAGCAGTTGGCGGAATAGTGATAGAAATGAGAGGTCAAGGATATCTAACGACAGTTATCAATCATTGGGTGACGAGGCTATTCTTCATGATCGATTCTCCCCTGAGGGTTTCATGGCTGTTGATCGTGTGCCACTGTATGGTTCTCGAAATATGGTTGATCAGCATAGAGATATGAGGATGGACGTAGACAATATGAGTTACGAGGAACTACTTGCCCTGGGAGAGAGGATTGGTCATGTCAGCACAGGATTGTCAGAGAACTTGATTTCCAAGTGTTTGACAGAATCAATATATTGTTCATCTGAGCAGAGTCAAGAGGAAGGAAGTTGTGTCATCTGCCTGGAAGAGTACAAGTACATGGACGATGTTGGGACACTGAGAAGTTGCGGCCATGACTATCATGTGAGTTGCATTAGAAAGTGGTTGTCTATGAAGAACATATGTCCTATCTGCAAAGCCTCTGCTCGTCCTGATGAAATGAAGGATAAATAA 1659 0.4322 MGHRHLYSISQMFGSEHEQNWNYMHPDQHNVQLGRASTSENGSFIHPLENMSINGSSMAAPWNNATMSNGYASSSINIELPPCQSDASRSSHDHFLRSSNPGAFFAVSENYACQPSSNYDRQTFHVTDGGFFDFTMGSGRGPQKRKSPGIPSVSERGSSSRYFGAGSSTDLPISSEIIRQEKPSLDSQYLPWDHVTMTPPFRGSGLSIRSDGPLRNVRSRSALDLESNLARTHLSDNHLHNLSFGPSTDHSSSVGLSGHSSSTMTRDWSQMNMSPAQGSVLISESSGYNHEPSRLLVGSGVSNASVDAGSYHHEYNASINPTVPQSFHSNPTHPGRGVRSNYSQRSAPTPTPTFRASSSSHVGHMVPSDGGLFMGAEGFISRHPRSLTASSWRNSDRNERSRISNDSYQSLGDEAILHDRFSPEGFMAVDRVPLYGSRNMVDQHRDMRMDVDNMSYEELLALGERIGHVSTGLSENLISKCLTESIYCSSEQSQEEGSCVICLEEYKYMDDVGTLRSCGHDYHVSCIRKWLSMKNICPICKASARPDEMKDK 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1555 552 CDD RING-H2_RNF24-like 499 544 - -
Acco02g1555 552 ProSiteProfiles Zinc finger RING-type profile. 499 541 IPR001841 -
Acco02g1555 552 MobiDBLite consensus disorder prediction 243 265 - -
Acco02g1555 552 SMART ring_2 499 540 IPR001841 -
Acco02g1555 552 MobiDBLite consensus disorder prediction 136 167 - -
Acco02g1555 552 MobiDBLite consensus disorder prediction 152 167 - -
Acco02g1555 552 Pfam Ring finger domain 498 541 IPR001841 -
Acco02g1555 552 FunFam E3 ubiquitin-protein ligase MBR2 isoform A 464 545 - -
Acco02g1555 552 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 140 544 IPR045191 GO:0061630
Acco02g1555 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 464 546 IPR013083 -
Acco02g1555 552 MobiDBLite consensus disorder prediction 320 362 - -
Acco02g1555 552 SUPERFAMILY RING/U-box 489 544 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1555 Acco-ChrAcco02 11917847 11920512 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1555 1 551 C3H Transcription Factor Family AT2G37150 41.239 8.09e-105 324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1555 02 11917847 11920512 Acco02g1555 02 11917847 11920512 ECH