Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1551 ATGCTCTCTGGTGACCCTTTTTCCTTATCCTCTTCCATCGGAGCCTTCGCTCCCGACCCAAATCCAAACCCTAACCCTAAACTCAATCCCCCTCCCCTCCCAAAAAAGAAGAGAAATCTCCCAGGAACACCAGATCCAGATGCCGAGGTCATCGCTCTGTCGCCCAAATCTCTCATGGCCACAAACCGATTCATATGTGAAATATGCAACAAAGGGTTTCAGAGAGACCAGAACCTGCAGCTTCACCGGAGGGGGCACAACCTTCCATGGAAGCTGCGACAAAGGTCGAACAAGGAGGTCAGGAAGAAGGTGTACATATGCCCAGAGAAGACATGCGTGCACCACGACCCGTCCAGAGCACTGGGGGACCTCACAGGGATAAAGAAGCATTATAGCAGAAAACACGGGGAGAAGAAATGGAAGTGCGACAAGTGTTCGAAGAAATACGCAGTCCAGTCCGATTGGAAAGCTCACACCAAAACTTGTGGTACTAGAGAATATAAGTGCGACTGTGGCACCCTCTTCTCTAGGAAGGATAGTTTCATCACCCACAGAGCTTTCTGCGATGCCTTGACAGAAGAGAGCGCGAGGCTCACCTCAGTTGGCACGTCAGATTTGAATTTTAAAAACGAAGAGTGTGTGATGAACTCTAACTCTCAGCTTAGCTCGGCTCATGGATTTGGCATCTCGCAATTCGGTGCAAATGGTTTTCGTTCAGAATTTGATGGAATGGGCATGAGTATGGATGGTGCTGACCAGCAAATCATGAGACCAAACTTGTCACTGTGGTTGAACCAGCTGGGAAATTCTGGTCTTTATGTGTCAAATTCGAGTTCTTCAGGTTTGCCCGAGATCAATATGCAAATGCCTCAACCTAGTAACACTTTTGCTCCTTCTTCTTTGTCCAATTATTCCCCCTCAATTGGGAAAAAAGGAGAGAGTAGTGGAAGTGGAAACCTATTATCTATTTATAATTCAGAGTCTCGAAGCAAGCAATCAAAGCCAGCTTCTCCCATGTCAGCCACTGCACTTCTACAGAAAGCGGCTCAACTGGGTTCAACCAGAAGCAGCAACCCTTCCATATTTAGCGGCAGTTTTGGAGTAATGAGCTCGTCTCCTTCCCAGATAACGGCAAGTCTCGAAAACAACAACGCAGACCAAATCCAAAATCGTAACAACAACGAGCTGAACCAACTGTATCATCATCAAAGTATGAAGCAATCAGAGAATTTTGGTTCAAGTAGCAGTGGTGTCGGTGGAACGTTGGGGATAAGCAATAACAACAACTTCAGCTCATTGACGCATTCATCGAGCAGTGGTCTTGATGAGCTTGTGTCACAGTCCCATGGAAGACAAAGTAACAACAAACAAGTGCAACTGAAGCTGCATCCTGATTCAAACAATGGAGAACAAGGTTACACCAGAGATTTTCTTGGAATGAGCGGACCAGGAGTAGCAGCTGGCTCTCCTTTCCTTCCCCAAGAGCTCGCTAAATTTGCTTCCATTGCCTCATCCATGGGAATGTCTCAGTTCCCGAGTAGTACTACTCAGTAA 1554 0.4678 MLSGDPFSLSSSIGAFAPDPNPNPNPKLNPPPLPKKKRNLPGTPDPDAEVIALSPKSLMATNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRSNKEVRKKVYICPEKTCVHHDPSRALGDLTGIKKHYSRKHGEKKWKCDKCSKKYAVQSDWKAHTKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEESARLTSVGTSDLNFKNEECVMNSNSQLSSAHGFGISQFGANGFRSEFDGMGMSMDGADQQIMRPNLSLWLNQLGNSGLYVSNSSSSGLPEINMQMPQPSNTFAPSSLSNYSPSIGKKGESSGSGNLLSIYNSESRSKQSKPASPMSATALLQKAAQLGSTRSSNPSIFSGSFGVMSSSPSQITASLENNNADQIQNRNNNELNQLYHHQSMKQSENFGSSSSGVGGTLGISNNNNFSSLTHSSSSGLDELVSQSHGRQSNNKQVQLKLHPDSNNGEQGYTRDFLGMSGPGVAAGSPFLPQELAKFASIASSMGMSQFPSSTTQ 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1551 517 MobiDBLite consensus disorder prediction 19 39 - -
Acco02g1551 517 SUPERFAMILY beta-beta-alpha zinc fingers 63 160 IPR036236 -
Acco02g1551 517 ProSiteProfiles Zinc finger C2H2 type domain profile. 64 86 IPR013087 -
Acco02g1551 517 Gene3D Classic Zinc Finger 118 197 - -
Acco02g1551 517 MobiDBLite consensus disorder prediction 433 477 - -
Acco02g1551 517 Pfam Zinc-finger double-stranded RNA-binding 64 86 IPR022755 -
Acco02g1551 517 ProSitePatterns Zinc finger C2H2 type domain signature. 66 86 IPR013087 -
Acco02g1551 517 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 26 494 IPR031140 -
Acco02g1551 517 MobiDBLite consensus disorder prediction 433 474 - -
Acco02g1551 517 MobiDBLite consensus disorder prediction 1 48 - -
Acco02g1551 517 MobiDBLite consensus disorder prediction 1 18 - -
Acco02g1551 517 FunFam protein indeterminate-domain 5, chloroplastic-like 118 197 - -
Acco02g1551 517 Gene3D Classic Zinc Finger 43 116 - -
Acco02g1551 517 MobiDBLite consensus disorder prediction 283 341 - -
Acco02g1551 517 SMART c2h2final6 64 86 IPR013087 -
Acco02g1551 517 SMART c2h2final6 140 160 IPR013087 -
Acco02g1551 517 SMART c2h2final6 105 135 IPR013087 -
Acco02g1551 517 FunFam protein indeterminate-domain 12-like 43 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1551 Acco-ChrAcco02 11879702 11881476 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1551 1 502 IDZ Gene Family AT5G03150 48.799 1.90e-136 402
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g1551 zf-C2H2_jaz 7.6e-05 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1551 02 11879702 11881476 Acco06g0465 06 2897308 2899401 CCT
Acco02g1551 02 11879702 11881476 Acco02g1551 02 11879702 11881476 ECH