Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1543 ATGGGCAACATAGGAAGTAGCAGCGCTAACGGCCGTCGGAGAAGCAATAGCAGACGGAGTCATCCGCCACCTCCGCCGCCGGTGGTTAGGCCGCAGCCAGAAATCGCGCCGAATCGGTCTGTTCATCCAGCATGTACACCTCAGAGATCGCATACCCAGGTCACTATTCCGCTCCCCATCAGGCTATACCGGCGCCTTTGCCGGCTCCTCTCGATCACCACCATCGTGCGAGGCCTCATCCACAAACGGACCCGTCATGGACGGGTTCTAATTACCTCAGAGATCGCATACCCAGGTCACTATTCCGCTCCCCATCAGGCTATGCCGGCGCCTTTGCCGGCTCCTCTCGATCACCACCATCGTGCGAGGCCTCATCCACAAACGGACCCGTCATGGACGGGTTCTAATTACCATTGCGGGCCTGCCATGCCTCCGCCTACACCATGTGTAGATTATCAGAAGGCGGTTACCCTGAGGAACGATGTTAATGTCAAGAAGGAGACTCTAAGAATTGAACCCGATGAGCAAAATCCTGGGCGGTTCCTCGTTGCTTTCACATTCGATGCCGCCATTGATGGGAGCATCACCATTCTTTTCTTTGGTAAAAAAGATGATAGCTGCATCCTCACACCAATGAAGCAAAATATTCTTGCCCCTGTAACTGTAAGTTTCCAGCAAGGTCTTGGGCAGCAGTTTAAGCAGCCAATTGGAACTGGTATCGACTTTTCAGTCTTTGAGGAATCAGAATTATCAGAAGTGGGTGTAATAGATGTGTTCCCTCTAGCAGTGAAGGCAGATGCGTCCGGTGGTGAACAAGATGGAGAACAAGATGGATCAAATGAAAATTTAACATCTGGTAACAGAAACTCTCAGATAACTCTGGCAGCATTTGAGAAGGAGAAAGGAAAATTCCGTGTAAAGGTAGTTAAGCAGATCTTGTGGGTGAATGAAACACAGTATGAACTGCAGGAGATATATGGTATTGTTAATTCAGTGGAGAGTGACTTGGATGAGAATGATTCCGGAGAGGAGTGTGTTATCTGCCTCTCGGAGCCACAAGACACAATTGTTCTTCCCTGCCGACACATGTGCATGTGTAGTGGGTGTGCTCAGGTTCTGAGGTTTCAGGCGTGCAGATGCCCAATTTGCAGACAGCCAGTTGAGATGCTTCTGGAGATAAAGGTCAATAATGATAACCGGCCTGAGGAATGA 1212 0.4983 MGNIGSSSANGRRRSNSRRSHPPPPPPVVRPQPEIAPNRSVHPACTPQRSHTQVTIPLPIRLYRRLCRLLSITTIVRGLIHKRTRHGRVLITSEIAYPGHYSAPHQAMPAPLPAPLDHHHRARPHPQTDPSWTGSNYHCGPAMPPPTPCVDYQKAVTLRNDVNVKKETLRIEPDEQNPGRFLVAFTFDAAIDGSITILFFGKKDDSCILTPMKQNILAPVTVSFQQGLGQQFKQPIGTGIDFSVFEESELSEVGVIDVFPLAVKADASGGEQDGEQDGSNENLTSGNRNSQITLAAFEKEKGKFRVKVVKQILWVNETQYELQEIYGIVNSVESDLDENDSGEECVICLSEPQDTIVLPCRHMCMCSGCAQVLRFQACRCPICRQPVEMLLEIKVNNDNRPEE 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1543 403 Pfam Zinc finger, C3HC4 type (RING finger) 343 389 - -
Acco02g1543 403 ProSiteProfiles Zinc finger RING-type profile. 345 384 IPR001841 -
Acco02g1543 403 MobiDBLite consensus disorder prediction 268 287 - -
Acco02g1543 403 PANTHER MAHOGUNIN 1 397 IPR045194 GO:0061630
Acco02g1543 403 SMART ring_2 345 383 IPR001841 -
Acco02g1543 403 CDD mRING-HC-C3HC5_MGRN1-like 344 384 IPR045195 -
Acco02g1543 403 SUPERFAMILY RING/U-box 344 390 - -
Acco02g1543 403 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 328 394 IPR013083 -
Acco02g1543 403 MobiDBLite consensus disorder prediction 1 51 - -
Acco02g1543 403 FunFam probable E3 ubiquitin-protein ligase LOG2 329 394 - -
Acco02g1543 403 MobiDBLite consensus disorder prediction 273 287 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1543 Acco-ChrAcco02 11844909 11847501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1543 138 364 C3H Transcription Factor Family AT3G09770 57.692 2.01e-88 270
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1543 02 11844909 11847501 Acco02g1543 02 11844909 11847501 ECH