Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1541 ATGAAGATTCCTCGTTCATTTCTGGCTTGTTTCTCACCTTCAGTCAACGAACCAAGTCACCTAGATGACAACACAGAAGGAGGCAGTAATGGTGAAGCATTTCGTGTATTCTCTGGCAGCGAATTGAAATTAGCCACTCGTGGTTTCAATTCCTTGGACAAGGTTGGAGAAGGCGGATTCGGTTCTGTTTACAAGGGGCAGCTTCGGAACGGTAATGTTGTGGCTGTGAAAGTGCTTTCAATCGAACTTGAATCCATGCGAGGAGAAATGGAGTTCGTGGCAGAATTGGCCACGCTGTGTCGTATCAAGCACGAAAATCTAGTTAGTCTTAGAGGGTGTTCTGTCGAAGAAGCCCGAAGATATTTGATCTTCGATTACATGGAAAACAATAGCCTCTCCCGCACTTTTTTTGGCACAGAGGAAAGAAGGATGAAATTTAGATGGGAATTGAGGAGCAACATATCTATTGGGGTGGCTCGTGGCCTTGCCTATCTCCACGACCAACTAAAACCCCACATTGTCCATCGAGATATCAAGCCCAGCAACATCCTCCTCGATCGTAACTTCACACCAAAACTATCTGACTTTGGCTTCGCCAAGCTATTTAGGGACGACAGGTCCTACGTCAGTACTAGAGTCGCCGGCACATTGGGCTATCTTGCTCCCGAGTATGCCACTACTGGGAAGTTGACACGGAAGTCAGATGTTTATAGTTATGGAGTATTGCTCTTACAAATTGTTAGCGGCCAAGCAGTAGTTGATGCTTATCAGGATACGGATCGTTTCCTAGTAGAGAAGGTGTGGGCAGCTTATAGAGCTAACGAGCTAGTAAAAATGGTGGATCCTGTGATTACAGATCTGAGCTTGGTAGAAGCCGTTAGGTTCCTAAAAGTGGGGCTACTTTGCGTGCAAGAAACTGCCAGGCTTCGGCCAAGAATGACAGAGGCCGTTGACATGTTGGCTAATAGCAGCAATGTTATTAATGACATGGAAGGGGTTGCTATTTCAAAACCAGGCTTTGTTGCTGATCTCAGAAACATCAAAATAAAGCAGAAAATACCTGTGAGTCCCGAATCTATTTCAAGTGGAACCAACCAGGGTCTTTGGAGTTCCCTCATTCTGCCCCGTTAA 1131 0.4571 MKIPRSFLACFSPSVNEPSHLDDNTEGGSNGEAFRVFSGSELKLATRGFNSLDKVGEGGFGSVYKGQLRNGNVVAVKVLSIELESMRGEMEFVAELATLCRIKHENLVSLRGCSVEEARRYLIFDYMENNSLSRTFFGTEERRMKFRWELRSNISIGVARGLAYLHDQLKPHIVHRDIKPSNILLDRNFTPKLSDFGFAKLFRDDRSYVSTRVAGTLGYLAPEYATTGKLTRKSDVYSYGVLLLQIVSGQAVVDAYQDTDRFLVEKVWAAYRANELVKMVDPVITDLSLVEAVRFLKVGLLCVQETARLRPRMTEAVDMLANSSNVINDMEGVAISKPGFVADLRNIKIKQKIPVSPESISSGTNQGLWSSLILPR 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1541 376 Gene3D Transferase(Phosphotransferase) domain 1 127 334 - -
Acco02g1541 376 ProSiteProfiles Protein kinase domain profile. 49 327 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g1541 376 SUPERFAMILY Protein kinase-like (PK-like) 33 320 IPR011009 -
Acco02g1541 376 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 35 352 - -
Acco02g1541 376 SMART serkin_6 49 320 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g1541 376 Gene3D Phosphorylase Kinase; domain 1 17 126 - -
Acco02g1541 376 FunFam Probable LRR receptor-like serine/threonine-protein kinase At1g29720 127 324 - -
Acco02g1541 376 CDD STKc_IRAK 55 320 - -
Acco02g1541 376 Pfam Protein kinase domain 50 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g1541 376 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Acco02g1541 376 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1541 Acco-ChrAcco02 11840611 11842347 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1541 36 343 Receptor kinase-like Gene Family AT1G56120 45.307 7.36e-85 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Acco02g1541 Pkinase 8.7e-48 CL0016