Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1516 ATGAAGTGTTTTCGATTTCACCATGCGGAGAAGAAGGAAGAACCGACGAGCATTAAGTCAGCTTCGGGTCGGTCCAACAGTTCCACAAATGCTGAGGATGATGTAAGAAGATCTGGTTCTGAATTCAATTCTAAGGATGTTTCTGAAAACAATACAGATACAGAGTCCCTTAGGAGGACTGCATTGCCCAGTTTGTCTCAAAGACCCAGCAACCTGAAAGTTTTCACTGTTCCTGAACTAAAATCAGCCACTAAGAATTTCAGTCGCTCTGTCATGCTTGGAGAGGGAGGATTTGGATGTGTCTACAAAGGTTTCATCAAGAGTGGAGACGATCCTAACAAAAAAATTGAAGTTGCTGTTAAACAACTTGGTAAAAGAGGAGCGCAGGGCCACAAAGAATGGGTGACAGAAGTTAATGTTCTGGGCATTGTTGAGCATCCCAATCTGGTAAAACTAGTGGGTTATTGTGCTGATGATGATGAAAGAGGAATCCAGCGGCTTCTGATTTATGAATATATGCCCAACAGTAGTGTGGAACACCACTTATCAACCCGTTCGGAGAATCCTCTCTCATGGAATAGAAGGTTGAAAATAGCTGAAGATGCAGCTCGGGGCTTAACATACCTGCATGAGGAAATGGATTTTCAGATAATCTTCAGAGATTTGAAATCTTCAAACATCCTCCTGGACGAGCATTGGAATGCAAAGCTATCAGACTTTGGGTTAGCTAGATTGGGACCACCTGAAGGATTAACTCATGTCTCAACAGCGGTCGTAGGAACAATGGGATATGCAGCTCCTGAATATGTTCAAACTGGCCGTCTGACATCCAAGAGTGATGTATGGAGCTATGGTGTCTTCCTTTATGAACTCATCACTGGCCGTCGCCCTTTTGATCGAAATCGTCCAAAGAGCGAGCAGAAGCTTTTGGAATGGGTGAGGCCATACTTATCAGATGGGAAGAAATTTCAACTAATATTGGATCCAAGGCTTGAAAGGAAAGACATTTTTAAGTCAGCTCAAAGACTTGCTATTGTAGCCAACCGATGTTTAGTCAAAAACCCTAAGAATCGCCCTAAGATGAGTGAGGTACTGGATATGGTGAATCAGATTGCCCAATCTTCATTGAATGCAAGTCCAGAGCTGCCCCTGAAGAATTTTGCATCAGCACAAGCGTCGCAAGAAACCAAATCAAAGAACAAGAGAAGGGTTATGGACCTGAAACCTGGAGAAACTAATTGGTTTTTTAGGATATGGAGACCAAAACAACGAAGAGCTAGTTGA 1284 0.4291 MKCFRFHHAEKKEEPTSIKSASGRSNSSTNAEDDVRRSGSEFNSKDVSENNTDTESLRRTALPSLSQRPSNLKVFTVPELKSATKNFSRSVMLGEGGFGCVYKGFIKSGDDPNKKIEVAVKQLGKRGAQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNSSVEHHLSTRSENPLSWNRRLKIAEDAARGLTYLHEEMDFQIIFRDLKSSNILLDEHWNAKLSDFGLARLGPPEGLTHVSTAVVGTMGYAAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPFDRNRPKSEQKLLEWVRPYLSDGKKFQLILDPRLERKDIFKSAQRLAIVANRCLVKNPKNRPKMSEVLDMVNQIAQSSLNASPELPLKNFASAQASQETKSKNKRRVMDLKPGETNWFFRIWRPKQRRAS 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1516 427 FunFam Serine/threonine-protein kinase PCRK2 173 381 - -
Acco02g1516 427 MobiDBLite consensus disorder prediction 1 63 - -
Acco02g1516 427 PANTHER OS01G0588500 PROTEIN-RELATED 41 372 - -
Acco02g1516 427 SUPERFAMILY Protein kinase-like (PK-like) 63 368 IPR011009 -
Acco02g1516 427 ProSitePatterns Protein kinases ATP-binding region signature. 93 121 IPR017441 GO:0005524
Acco02g1516 427 Gene3D Phosphorylase Kinase; domain 1 61 172 - -
Acco02g1516 427 MobiDBLite consensus disorder prediction 44 63 - -
Acco02g1516 427 Gene3D Transferase(Phosphotransferase) domain 1 173 388 - -
Acco02g1516 427 Pfam Protein tyrosine and serine/threonine kinase 92 366 IPR001245 GO:0004672|GO:0006468
Acco02g1516 427 SMART serkin_6 87 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g1516 427 CDD STKc_IRAK 93 371 - -
Acco02g1516 427 FunFam Serine/threonine-protein kinase BIK1 54 172 - -
Acco02g1516 427 ProSiteProfiles Protein kinase domain profile. 87 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1516 Acco-ChrAcco02 11626830 11630043 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1516 3 365 Glycoside Hydrolase AT3G07070 44.772 1.15e-94 289
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Acco02g1516 Pkinase 5.3e-49 CL0016