Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1481 ATGGAGGTCACAGGCCAAGAACTTGTGGTGTGGAATAAGGATCATCAAGCTCAACAAGTCATGAAGGGCAAGCGCACCAAGCGTTCCAGGTTACCCTCTCCACTCAGGCTATCCATGGCTTCTTCTTCTTCCAGCGCCGGCGGAAGAGCCAGCACTGACGACCATTCCGGCGGATCATCATCAGTAGTAGATATGGCTACAACCTCCACTGATCCATTGAGGGTAAGTACTGAAGAAGAGGACATGGCTAACTGTTTGATCCTTCTGGCTCAAGGCCATAATACCCGCCATGAGCCCTCTTCCTACAACAACAACAACAACGATAACAAGACTTCCTCTGGGCTATACGTTTATCAGTGTAAAACATGTGATCGATGCTTTCCTTCGTTCCAAGCGCTTGGTGGTCACAGAGCCAGCCACAAGAAACCAAAGCCCAATAATTCTGAAGAAAAGCTTCAATCAGTTGCATTTGCAAACCAAGAGGCTCATCATGACCAACCCTATGACCCCACCGGCACAAGCTTCGTTCTTTCCTTGCAGATATCAAATAGTAGCATTCATAATAAGTCGAAGGTACACGAGTGTTCTATTTGTGGGGCGGAGTTTACTTCTGGGCAGGCTTTAGGGGGTCATATGAGGCGTCACAGAACACTTGTGAACAATTCTGCGACGTGCACGACGAGTACAGGGAATAATAATTCTCAACTCCAGAAAGCCAACAAGCCCACAACCAAGAATGCTTTGGAGTTGGATTTGAATCTTCCGGCACCAGAAGATGATCACAGGGAATCCAAGTTGCCTTTTCAGTCTAAAGAAAATGTTCTTGTTTTCTCTGCCTCTTCTTTGGTGGATTGCCATTATTGA 864 0.4676 MEVTGQELVVWNKDHQAQQVMKGKRTKRSRLPSPLRLSMASSSSSAGGRASTDDHSGGSSSVVDMATTSTDPLRVSTEEEDMANCLILLAQGHNTRHEPSSYNNNNNDNKTSSGLYVYQCKTCDRCFPSFQALGGHRASHKKPKPNNSEEKLQSVAFANQEAHHDQPYDPTGTSFVLSLQISNSSIHNKSKVHECSICGAEFTSGQALGGHMRRHRTLVNNSATCTTSTGNNNSQLQKANKPTTKNALELDLNLPAPEDDHRESKLPFQSKENVLVFSASSLVDCHY 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1481 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 193 215 IPR013087 -
Acco02g1481 287 Pfam C2H2-type zinc finger 192 216 - -
Acco02g1481 287 Pfam C2H2-type zinc finger 117 143 - -
Acco02g1481 287 ProSitePatterns Zinc finger C2H2 type domain signature. 195 215 IPR013087 -
Acco02g1481 287 SUPERFAMILY beta-beta-alpha zinc fingers 190 216 IPR036236 -
Acco02g1481 287 Gene3D Classic Zinc Finger 97 170 - -
Acco02g1481 287 Gene3D Classic Zinc Finger 171 253 - -
Acco02g1481 287 MobiDBLite consensus disorder prediction 35 69 - -
Acco02g1481 287 ProSiteProfiles Zinc finger C2H2 type domain profile. 118 145 IPR013087 -
Acco02g1481 287 PANTHER ZINC FINGER PROTEIN ZAT5 67 266 - -
Acco02g1481 287 SMART c2h2final6 118 140 IPR013087 -
Acco02g1481 287 SMART c2h2final6 193 215 IPR013087 -
Acco02g1481 287 ProSitePatterns Zinc finger C2H2 type domain signature. 120 140 IPR013087 -
Acco02g1481 287 MobiDBLite consensus disorder prediction 16 69 - -
Acco02g1481 287 SUPERFAMILY beta-beta-alpha zinc fingers 117 145 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1481 Acco-ChrAcco02 11334703 11335566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1481 20 287 C2H2 Transcription Factor Family AT5G03510 43.860 1.68e-59 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g1481 zf-C2H2_6 5.8e-10 CL0361