Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Acco02g1480 | ATGGCGGTTCCAGGGAGGCGCAATGGTCTGAACGATGACGACGACGATAACTTTGAAGAGGACAACGCCCTCTTTGAAGAAAATGGGCTGTTGGAGGTTGATGAATCGGATACGCCTCCTCATCTACGCGACCTGGCCGTTGCCTCTCAGTTTGGTGACCTCGATAACCTCCGCCTCGCTCTAGATAACCTGATTGGAAGTATTGATGAACCTGTGGAAGATGGGGATACGGCTCTACATCTGACCTGCTTGTATGGCCATTTATCGTGTGTTCAGCTACTTCTGGAAAGAGGAGCGAACATGGAGTGTACGGATGAAGATGGAGCAATTCCATTACATGATGCTTGTGCAGGAGGGTATGCTGAGATAGTCCAACTGCTACTTAACAGAGCTGGTAATCCAGAAAATATAAGGAGGATGCTTGAATCAGTTGATTCAGAGGGTGATACACCGCTCCATCACGCTGCTAGAGGCGAGCATGTTGATGTCATTAGGTTATTGCTGTCTCATGGTGCATCTCCCACAAAGACAAACTTATATGGAAAGGTCCCAGCAGAATTACCTGATCAGGACACAGACGCAAGGAGATTGCTGGAAGCCGCTGTTGCTACTTCCACACCATCTCAATAG | 630 | 0.4841 | MAVPGRRNGLNDDDDDNFEEDNALFEENGLLEVDESDTPPHLRDLAVASQFGDLDNLRLALDNLIGSIDEPVEDGDTALHLTCLYGHLSCVQLLLERGANMECTDEDGAIPLHDACAGGYAEIVQLLLNRAGNPENIRRMLESVDSEGDTPLHHAARGEHVDVIRLLLSHGASPTKTNLYGKVPAELPDQDTDARRLLEAAVATSTPSQ | 209 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Acco02g1480 | 209 | ProSiteProfiles | Ankyrin repeat profile. | 107 | 139 | IPR002110 | GO:0005515 | |
| Acco02g1480 | 209 | ProSiteProfiles | Ankyrin repeat region circular profile. | 74 | 106 | - | - | |
| Acco02g1480 | 209 | Pfam | Ankyrin repeats (3 copies) | 45 | 130 | IPR002110 | GO:0005515 | |
| Acco02g1480 | 209 | FunFam | BRCA1-associated RING domain protein 1 | 39 | 206 | - | - | |
| Acco02g1480 | 209 | Gene3D | - | 41 | 151 | IPR036770 | - | |
| Acco02g1480 | 209 | PANTHER | SOWAH (DROSOPHILA) HOMOLOG | 147 | 202 | - | - | |
| Acco02g1480 | 209 | Pfam | Ankyrin repeat | 148 | 178 | IPR002110 | GO:0005515 | |
| Acco02g1480 | 209 | ProSiteProfiles | Ankyrin repeat region circular profile. | 107 | 133 | - | - | |
| Acco02g1480 | 209 | SUPERFAMILY | Ankyrin repeat | 45 | 186 | IPR036770 | - | |
| Acco02g1480 | 209 | ProSiteProfiles | Ankyrin repeat profile. | 74 | 106 | IPR002110 | GO:0005515 | |
| Acco02g1480 | 209 | Gene3D | - | 152 | 201 | IPR036770 | - | |
| Acco02g1480 | 209 | ProSiteProfiles | Ankyrin repeat profile. | 147 | 179 | IPR002110 | GO:0005515 | |
| Acco02g1480 | 209 | ProSiteProfiles | Ankyrin repeat region circular profile. | 147 | 173 | - | - | |
| Acco02g1480 | 209 | PRINTS | Ankyrin repeat signature | 75 | 90 | IPR002110 | GO:0005515 | |
| Acco02g1480 | 209 | PRINTS | Ankyrin repeat signature | 163 | 177 | IPR002110 | GO:0005515 | |
| Acco02g1480 | 209 | SMART | ANK_2a | 147 | 176 | IPR002110 | GO:0005515 | |
| Acco02g1480 | 209 | SMART | ANK_2a | 107 | 136 | IPR002110 | GO:0005515 | |
| Acco02g1480 | 209 | SMART | ANK_2a | 74 | 103 | IPR002110 | GO:0005515 |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Acco02g1480 | 69 | 190 | Ion Channels | AT2G26650 | 28.767 | 1.87e-12 | 63.9 |