Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1462 ATGAAGCAAGAATTGGAATCGGAGATTGCCCTGGAGATTCAGTCTCTGAATAAAGGAGATGAAGTCGTTCCTTCTCTATCTTCTGAAATTGACGCTGGCTCAGAGTCTCAGTTGATGTTTTCTTTGCATGTTTCTGAGAATCCTGGCGGGATAGTTAAAAGTTCCGATGAAAATGGTTATCTTGTTTATACTCGAACAAAGAAGTCTCGGCATTTGCGCAATGGATCTTCTGAGAATGGTTCGCTTAAGAGACTAAAGACCTCTGAAGATCGGGAGCCAAATGCAGACCTTCCCGCTATTGTGGGCGGAGATGATTTAGAGCTAAACAATGTAGGACAAAATATCGAATCTGAAGTCGTTTGGCATTTAGAAAAGTCAGTTAGGTGTACTGAATTGAAGAACGAGCCGGTGCAGTTCCTTGCTGGGGAAGGTGGCTCCAATAAGATTCCCACCAAGCCTTTTAACATTGAGGCACAGAAAAATGTAGATAAAACAGTGAAGCGGTTTACGCGATCAGCCTTGAAACCAAAGGTTGAATGCAGCGATGAGACGAGGACTGCTCAAGAAGCTGCTCGAACAGAAAATGATAGATCAGTTGAGAAAGAGACCGCTGCTGTAAGTGCATCAACGACTCGGCGAAATAAGTTGGAACTGAAAATGTCCAACAAGATCGTGCTCAGCAAGAAGCCTATGACTGTCAAGGAACTATTCGATACTGGTTTACTGGATCGGGTTTCAGTAGTTTATATGGGCGGTAAGACTTCTGGCCTGCGGGGTGTTATTACAGATGGAGGGATCTTGTGCTCTTGTTGTCAGTGCAATGAGCGCAAGGTTATTCCACCTTCCCAATTCGAGATTCATGCTTGCAAATCATATAAGCGAGCAGCACAGTATATTTGCTTTGAAAACGGAAAGAGCCTGCTTGAATTATTGAGAGCATGCAGAGGAACTTCGCTGCATTCATTGGAGACGGCAATTCAAAACTTTGTTGGTTCTCTACCTCAAGAGAAATATTTTATATGTAAAGAGTGCAAAGGATGTTTTTCCTCTTCACTAGCGGAAAAAGTAGGGCCTATATGTAAAGCTTGTTTGGAATCAAAGGAATCTGAAGGTAGTTTAATCGACACAGTTGGCAAAAGTGTCAGAAATGGTAGTGTGATGTCTCCCAGACCAGATCCAACCTCCAAACCATTAATTGATTCTGAGCTGTGTAACTCGCCACAAACTAACAAACATTGGAAGAAAAGGACGAGGACAACAAATCGGGTTAGCAGCTCAAAGTCTTCAGAGACTGCTTCTGTGCCCATCCTATCGCGAAAGAAGCCTCTGCAGAGGTTGAAGAAGTCCGTGGATCAGCGGTTACATAAATTAGTTTTTGAAGAAGGTGGACTGCCTGATGGAACAGAAGTGGCTTATTATGGACGTGGACAGGTCAGCCCATCACAATTCGAGCTCCATGCAGGCTGGGCTTCTCGCAGGAAACCTTATGCATACATCTACACTTCAAATGGGGTTTCTCTCCATGAATTAGCAATTTCTCTTTCAAAAGGCCGCAAGTACTCTTCAAAGGACAATGATGATCTTTGCATTATTTGTTGGGATGGTGGAAATCTGTTGCTTTGTGATGGATGCCCAAGGGCATTTCATAAAGAATGCGCATCTCTATCAAGCATTCCACGTGGTGACTGGTACTGTAAATTTTGCCAAAACATGTTCCAGAGGGAAAGATTTGTAGCACACAATGCCAATGCTGTGGCTGCTGGAAGGATTGACGGGGTTGATCCTATTGAACAGATAACCAAGAGATGCATTCGCATTGTCAAAGACATTGAAGCTGAGCTGAGCGGCTGTGCTTTATGTAGGGGTTATGACTTCAGCAAGTCAGGATTTGGTCCTCGCACAATTATACTCTGCGACCAGTGTGAAAAGGAATATCATGTAGGCTGTTTGAGGGATCATAAGATGGCATATTTGAAGGAATTGCCAGAAGGAAATTGGTTTTGTTGCACAGATTGCAACAGAATACATTCTACTCTGCAGAAGTTCTTGATCAGGGGGACTGAGAAACTTCCTGACTCTCTTGTGGATGTTATCAAGATAAAACAAGAGGAAAACGGTTTGCAGTCTTTCAATGATATTGATGTAAGATGGAGGCTTCTTAATGGCAAAATTGCTTCTCCTGAGACCAGGCCATTGCTGTCAGAGGTTGTTTCAATCTTTCATGAATGTTTTGATCCTATAGTTGATTCAACTAGTGGACGTGACCTTATCCCAGCCATGGTTTATGGAAGGAATGTGCGGAGTCAAGAGTTTGGAGGAATGTATTGTGTAATATTATTGGTCAATTCAATTGTTGTATCAGCTGGCATGCTTCGAATTTTTGGTAAAGATGTGGCCGAACTTCCTTTAGTTGCCACAAGCAATGGTAATCATGGAAAGGGCTACTTCCAGTTACTCTTCACCTGCATTCAGAGATTGCTGGCGCTGTTGAACGTAAAAATGCTTGTGCTACCAGCTGCTGAAGAAGCAGAATCCATATGGACAGATAAATTTGGGTTCGACAAGATGAAACCAGAGCAGATTAGCAACTGTAGAAAGAACTACAGTCAGATAGTGACATTTCAAGGGACATCTATGCTTCAAAAAATGGTTCCGCCCTGTCAAGTCTTCAACGTGAAAGAGGAAGATTCGTAG 2694 0.4291 MKQELESEIALEIQSLNKGDEVVPSLSSEIDAGSESQLMFSLHVSENPGGIVKSSDENGYLVYTRTKKSRHLRNGSSENGSLKRLKTSEDREPNADLPAIVGGDDLELNNVGQNIESEVVWHLEKSVRCTELKNEPVQFLAGEGGSNKIPTKPFNIEAQKNVDKTVKRFTRSALKPKVECSDETRTAQEAARTENDRSVEKETAAVSASTTRRNKLELKMSNKIVLSKKPMTVKELFDTGLLDRVSVVYMGGKTSGLRGVITDGGILCSCCQCNERKVIPPSQFEIHACKSYKRAAQYICFENGKSLLELLRACRGTSLHSLETAIQNFVGSLPQEKYFICKECKGCFSSSLAEKVGPICKACLESKESEGSLIDTVGKSVRNGSVMSPRPDPTSKPLIDSELCNSPQTNKHWKKRTRTTNRVSSSKSSETASVPILSRKKPLQRLKKSVDQRLHKLVFEEGGLPDGTEVAYYGRGQVSPSQFELHAGWASRRKPYAYIYTSNGVSLHELAISLSKGRKYSSKDNDDLCIICWDGGNLLLCDGCPRAFHKECASLSSIPRGDWYCKFCQNMFQRERFVAHNANAVAAGRIDGVDPIEQITKRCIRIVKDIEAELSGCALCRGYDFSKSGFGPRTIILCDQCEKEYHVGCLRDHKMAYLKELPEGNWFCCTDCNRIHSTLQKFLIRGTEKLPDSLVDVIKIKQEENGLQSFNDIDVRWRLLNGKIASPETRPLLSEVVSIFHECFDPIVDSTSGRDLIPAMVYGRNVRSQEFGGMYCVILLVNSIVVSAGMLRIFGKDVAELPLVATSNGNHGKGYFQLLFTCIQRLLALLNVKMLVLPAAEEAESIWTDKFGFDKMKPEQISNCRKNYSQIVTFQGTSMLQKMVPPCQVFNVKEEDS 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1462 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 613 675 IPR013083 -
Acco02g1462 897 MobiDBLite consensus disorder prediction 179 201 - -
Acco02g1462 897 SUPERFAMILY FYVE/PHD zinc finger 515 570 IPR011011 -
Acco02g1462 897 MobiDBLite consensus disorder prediction 405 434 - -
Acco02g1462 897 PANTHER AUTOIMMUNE REGULATOR 126 883 - -
Acco02g1462 897 SUPERFAMILY FYVE/PHD zinc finger 608 672 IPR011011 -
Acco02g1462 897 Pfam PHD-finger 529 570 IPR019787 -
Acco02g1462 897 MobiDBLite consensus disorder prediction 68 97 - -
Acco02g1462 897 MobiDBLite consensus disorder prediction 179 212 - -
Acco02g1462 897 CDD PHD1_AIRE 528 568 - -
Acco02g1462 897 MobiDBLite consensus disorder prediction 381 400 - -
Acco02g1462 897 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 613 675 - -
Acco02g1462 897 ProSitePatterns Zinc finger PHD-type signature. 529 568 IPR019786 -
Acco02g1462 897 ProSiteProfiles Zinc finger PHD-type profile. 526 571 IPR019787 -
Acco02g1462 897 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 515 592 - -
Acco02g1462 897 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 515 598 IPR013083 -
Acco02g1462 897 SMART PHD_3 616 673 IPR001965 -
Acco02g1462 897 SMART PHD_3 528 569 IPR001965 -
Acco02g1462 897 Pfam Tify domain binding domain 259 314 IPR032308 -
Acco02g1462 897 Pfam Tify domain binding domain 478 512 IPR032308 -
Acco02g1462 897 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 767 856 IPR016181 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1462 Acco-ChrAcco02 11081386 11088925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1462 224 891 PHD Transcription Factor Family AT2G36720 51.984 0.0 753
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Acco02g1462 TDBD 2.4e-14 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1462 02 11081386 11088925 Acco06g0859 06 5672150 5679829 CCT
Acco06g0290 06 1825531 1828790 Acco02g1462 02 11081386 11088925 CCT