Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1448 ATGGCGGAATCGGTTTCTGGTGATTCCTCCAACCACACTCCGGTACCGGCGCCGGCTCCTGATGACAAAAGTAGGGCTGATGAGGCGGAAGTCGAAGTTCCAGAAGAAAAAGTTGCTCCGGCTCCGGCTCCGGCTCCTGATCACAAAAGTTGGGCTGATGAGGCGGAAGACGAAGTTCCAGAAGAAAAAGTTCCGGTTCTGGCACCGGCTCCTGATCACAAAAGTTGGGCTGATGAGGCGGAAGGAATAGTTCCAGAAGGAACAAGTGAGTCCACAGCGAGTTCGTTGACGGTCTCGTCGCTTAAAGTTGATGGATTAGCAATCGACGAGAAAAAGAAGAGTCCTAAGGTTTTGGACGAACCCGATGATTCCAGTATCCAAGCGGTTACATCGGGCGATACTCCGTATACTTCTGCAAGTACATTTGAAGATTTAAATCTATCCCCAGAGTTGCTAAAGGGATTGTATGTTGAGATGAAATTCCAGAAGCCTAGCAAGATTCAAGCTATCAGTTTGCCGATGATTTTGAACCCTCCTCACAAGGATTTGATCGCTCAGGCGCATAACGGGTCTGGCAAGACAACTTGTTTTGTACTTGGGATGCTGAGTCGTGTTGATCCTAAGGTGCAAGCTCCTCAGGCCCTTTGCATTTGTCCAACAAGAGAATTAGCTATTCAGAATATGGAAGTTCTTCGAAAGATGGGGAGGTACACAGGGATTGTTTCTGAATGTGCCATTCCCACAGACAGCAGAGATTATATTCCAATAACAAAACGACCACCCATAATGGCTCAAGTAGTGATTGGGACTCCTGGCACGATTAAGAAGTGGATGTCATCTAAGAATCTGGGTGTCAGCAGATTAAAAATTTTAGTTTTTGACGAGGCTGATCAAATGCTTGCTGAGGATGGTTTTAGAGATGATTCCTTGAGGATAATGAAGGAAATAGAAAAAGTCAATCTGCATTGTCAGGTTCTTCTTTTTTCGGCTACCTTTAACGACACTGTGAAGAATTTTGTTTCAAGGGTAGTTAAGAAAGATCATAATCAACTTTTTGTGAAGAAAGAAGAACTGTCTTTACAGGCAGTGAGACAGTACAAGGTGTACTGTCCTGATGAGCTCTCTAAGATTCATGTGATCAGAGATTACATATTTGAGATAGGAGAGAATGTTGGGCAAACTATTGTATTTGTGCGCACAAGAGGCAGTGCAAGCATGTTGCATAAATCACTTAATGATTTGGGTTATGGGGTTACCTCCATACAAGGTGCTCTTGACACTAATGAGAGAGACAAGATTGTCAAAGAGTTCAGGGATGGTCTAACTCAGGTTCTTATATCTACTGATGTTCTTGCTCGAGGTTTTGATCAGCAACAGGTGAATTTGGTCATCAATTACGATCTCCCTGTGAAACACACTGCTGAATATACCCGTGAACCAGAGCCTGATTATGAGGTATATTTGCACAGGGTTGGTAGGGCCGGACGTTTTGGGCGCAAGGGTGCTGTATTTAACTTGATATGTGATGAAAGGGATGAAAATATGATGGAAAAAATTGAGAAACATTTTGGCATCCGGGTAACTGAGGTCCAAGAAAAAAATGCTGATGATTATAAACGCGCTCTTAAAGAGGCTGGTTTACTGCAATAA 1650 0.4358 MAESVSGDSSNHTPVPAPAPDDKSRADEAEVEVPEEKVAPAPAPAPDHKSWADEAEDEVPEEKVPVLAPAPDHKSWADEAEGIVPEGTSESTASSLTVSSLKVDGLAIDEKKKSPKVLDEPDDSSIQAVTSGDTPYTSASTFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHKDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCICPTRELAIQNMEVLRKMGRYTGIVSECAIPTDSRDYIPITKRPPIMAQVVIGTPGTIKKWMSSKNLGVSRLKILVFDEADQMLAEDGFRDDSLRIMKEIEKVNLHCQVLLFSATFNDTVKNFVSRVVKKDHNQLFVKKEELSLQAVRQYKVYCPDELSKIHVIRDYIFEIGENVGQTIVFVRTRGSASMLHKSLNDLGYGVTSIQGALDTNERDKIVKEFRDGLTQVLISTDVLARGFDQQQVNLVINYDLPVKHTAEYTREPEPDYEVYLHRVGRAGRFGRKGAVFNLICDERDENMMEKIEKHFGIRVTEVQEKNADDYKRALKEAGLLQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1448 549 CDD SF2_C_DEAD 363 507 - -
Acco02g1448 549 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 109 522 - -
Acco02g1448 549 MobiDBLite consensus disorder prediction 21 35 - -
Acco02g1448 549 MobiDBLite consensus disorder prediction 1 76 - -
Acco02g1448 549 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 212 515 IPR027417 -
Acco02g1448 549 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 379 546 IPR001650 -
Acco02g1448 549 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 140 169 IPR014014 GO:0003724
Acco02g1448 549 Pfam DEAD/DEAH box helicase 166 338 IPR011545 GO:0003676|GO:0005524
Acco02g1448 549 Pfam Helicase conserved C-terminal domain 380 498 IPR001650 -
Acco02g1448 549 SMART helicmild6 405 498 IPR001650 -
Acco02g1448 549 MobiDBLite consensus disorder prediction 113 137 - -
Acco02g1448 549 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 350 IPR014001 -
Acco02g1448 549 Gene3D - 119 356 IPR027417 -
Acco02g1448 549 Gene3D - 357 546 IPR027417 -
Acco02g1448 549 CDD DEADc_DDX19_DDX25 147 346 - -
Acco02g1448 549 SMART ultradead3 160 369 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1448 Acco-ChrAcco02 10958013 10962848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1448 105 536 Eukaryotic Initiation Factors Gene Family AT1G72730 34.694 1.61e-69 228