Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1439 ATGGATTGGGATTGGAGCATAAGACCTTCTGTTCCTCCTGCAGAGCCTTCCTCCTTTGGCTTCCTCTATAACTTTAACTACACTCCATATCCAGGAATGGGAGTGAAACAACCAGCAATGACAGAGAGTGAGCGACAAGGATTGACTCTGGGAATGGACAAAGTCAACAACGGGAAGCAAGAACAACAGCAGAAGAGGAAGAAGAAGAGATTAACAGGCAAGCAGGTAGAGTCACTGGAGAAGAGTTTTGAGAAGGAGAAAAAATTGGACGCAGATAGGAAGATGAAGCTGTCGAAGGAGGTAGGGTTGCCGCCTCGCCAAGTAGCTGTTTGGTTCCAAAACAGGAGGGCGAGGTGGAAGGCAAAGCAGCTTGAGCACTTGTATGATGCTCTCAAACGGGGCTTTGATGCCATGTACAAGGAAAAACAGAAGCTTCAAGAAGAGGTTACAATATTAAAAGCCATGCTGAGTAGGCAAGAATCTAGGACGACGCAGGCATCTGCTGATTATCTACAAATCTGGGGAAGAACGTAG 534 0.4663 MDWDWSIRPSVPPAEPSSFGFLYNFNYTPYPGMGVKQPAMTESERQGLTLGMDKVNNGKQEQQQKRKKKRLTGKQVESLEKSFEKEKKLDADRKMKLSKEVGLPPRQVAVWFQNRRARWKAKQLEHLYDALKRGFDAMYKEKQKLQEEVTILKAMLSRQESRTTQASADYLQIWGRT 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1439 177 Coils Coil 128 162 - -
Acco02g1439 177 ProSiteProfiles 'Homeobox' domain profile. 62 122 IPR001356 GO:0003677
Acco02g1439 177 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 56 163 IPR045224 GO:0003700
Acco02g1439 177 Pfam Homeobox associated leucine zipper 122 156 IPR003106 GO:0006355|GO:0043565
Acco02g1439 177 ProSitePatterns 'Homeobox' domain signature. 97 120 IPR017970 GO:0000981|GO:0006355
Acco02g1439 177 Pfam Homeodomain 65 120 IPR001356 GO:0003677
Acco02g1439 177 SUPERFAMILY Homeodomain-like 51 124 IPR009057 -
Acco02g1439 177 Gene3D - 26 123 - -
Acco02g1439 177 SMART HOX_1 64 126 IPR001356 GO:0003677
Acco02g1439 177 MobiDBLite consensus disorder prediction 35 85 - -
Acco02g1439 177 PRINTS Lambda-repressor HTH signature 93 102 IPR000047 GO:0003677
Acco02g1439 177 PRINTS Lambda-repressor HTH signature 102 118 IPR000047 GO:0003677
Acco02g1439 177 CDD homeodomain 71 123 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1439 Acco-ChrAcco02 10863082 10863917 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1439 12 154 Homeobox Transcription Factor Family AT5G03790 49.333 6.08e-42 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco02g1439 Homeodomain 3.4e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco06g0878 06 5820187 5821596 Acco02g1439 02 10863082 10863917 CCT
Acco02g1439 02 10863082 10863917 Acco02g1439 02 10863082 10863917 ECH