Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1414 ATGAACCCGAACGACGAAGTTCAACCAAATTCTCCGAAGAGGTCGAAGGGTAAAGCTTCGGAGCAGGAAACATATGGGTTCTCTCCCATGGAATTAAATTCTGGAGCGTTCGGAGATGCCTCAGCTAGTCTGTCAATGGCGGACATTGGCCTCTCTGGCCATCCTCCTTCGTCTTTGTATGATTCTCCTTTCATGGAGTTTAGAGCATTCTCAACCATGAGCCCGACGTCTCTGGTTTCGCCGCCTCCTGCTGCTCCTGTTAGTGATGAGAGAACTCCTTCGGTACCAACAACTATTAAGGAGGAGGCTGGAGGTGAGTTTGAGGACGTGGATTTGCCACACCCGCTTGAGTGTTTACAGGAGAATCCGATTCCGCCATTTCTATGCAAAACTTACGATCTGGTGGATGATCAGTCTCTGGATTCGATCATATCATGGGGCTCGGCCGGTGCTAGTTTCGTGGTATGGGACCCTGTGGAATTTGCAAGGATCGTCTTGCCAAGGAATTTCAAGCATAACAATTTCTCCAGTTTTGTTCGCCAGCTAAATACTTATGTGGGTATTGCTTTAACACAGCCTGGAAAGGCTGCTGTGATCTCTAGGATTGAGAGGTTGGCGACTGAAGGAATATTTGGCCTGCTAAGTTTCTTCTGTTGTCTTAAGCAATTTGTATCCCAGGGGTTCCGCAAGATTGACCCTGATAAGTGGGAGTTTGCGAATGAAGGTTTCAAGCAAGGGAGGAGACATCTACTGAAGAACATACAAAGGCGCAGATCACTGCAATCCCAGCATGCTGGTAATGTTGGGCCATCCACTGAAGCAGGAAAGTCTGGAGTCGAGGTCGAGATAGAAAGATTGAGAAAGCAGAGAAGTATATTAGTCCAAGATTTGGTTGATTTGCAGCAACAACAGAGAAGGACTGTTCATCAGGCCGGACAAGTGAGCCAGAGGCTTGAATCTGCAGAGCAGAGACAGAGACAAATGGTTTCTTTCTTGGCCAAGTTATTTCAAAATCCAGCATTTTTAGCCCGCCTGAGGCAACAAAAGGAACCGGCAGGTATAGATTCCCCAAGAGTGAGAAGGAAGTTTGTCAAGCAGCACCAACATGAAACAGGAACATCAGAATCTTTGAATGAAGGGCAGATTGTAAAATACCAACCGGATTGGAGAGACATTACCAACCCTTCAGAAACACCAGTACCAAATCCAATTTCTACTGAACAGTCTCCTGAGTACCCTTCACATGGTTGGGCAAGAGAACTTGGTTCAGTGGCAGAAAATCCTTATCTGCAAGCTGATGTATCAGATGAATTGGCTGCAACTAGTGAAATAATGACAACTCCAAAGATTATAGGGGAAGGATCGTCAAGCTTATGGCTCGAAGATCCTCTTTGGAAAGGGAAAAACGTCATGAGGCCTGATCAAGAAGTTATACCGGAGGATCTGAGCAGGGAGAAAAGTTTTTCAATGTTTTACCCGCTTGAAACTGAAAGCGTTATTAAACAAGATGTATGGAACCCGGGCTTTAATGTCAGCGGTACTACTTCTAGCTCTGTGAGTGAGCTGTGGGACAGTCCAATTCCAACCAATTATGAAGTGCCAGAGTTTGGAGTCACAGGTGGCTTATCAGACCTCTGGGATATAAGCTATATGCAAGAAACAGATAAGTGGCCAACTGATGAGTTCCCTCCAAATGAAACAGAAGGTCAGGCTGATCGCCCAAAAGATGATAGATCTAAGAATGTCGATCCATAG 1755 0.4575 MNPNDEVQPNSPKRSKGKASEQETYGFSPMELNSGAFGDASASLSMADIGLSGHPPSSLYDSPFMEFRAFSTMSPTSLVSPPPAAPVSDERTPSVPTTIKEEAGGEFEDVDLPHPLECLQENPIPPFLCKTYDLVDDQSLDSIISWGSAGASFVVWDPVEFARIVLPRNFKHNNFSSFVRQLNTYVGIALTQPGKAAVISRIERLATEGIFGLLSFFCCLKQFVSQGFRKIDPDKWEFANEGFKQGRRHLLKNIQRRRSLQSQHAGNVGPSTEAGKSGVEVEIERLRKQRSILVQDLVDLQQQQRRTVHQAGQVSQRLESAEQRQRQMVSFLAKLFQNPAFLARLRQQKEPAGIDSPRVRRKFVKQHQHETGTSESLNEGQIVKYQPDWRDITNPSETPVPNPISTEQSPEYPSHGWARELGSVAENPYLQADVSDELAATSEIMTTPKIIGEGSSSLWLEDPLWKGKNVMRPDQEVIPEDLSREKSFSMFYPLETESVIKQDVWNPGFNVSGTTSSSVSELWDSPIPTNYEVPEFGVTGGLSDLWDISYMQETDKWPTDEFPPNETEGQADRPKDDRSKNVDP 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1414 584 MobiDBLite consensus disorder prediction 554 584 - -
Acco02g1414 584 MobiDBLite consensus disorder prediction 391 412 - -
Acco02g1414 584 MobiDBLite consensus disorder prediction 1 15 - -
Acco02g1414 584 FunFam Heat stress transcription factor B-4 119 197 - -
Acco02g1414 584 SMART hsfneu3 123 257 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1414 584 Gene3D - 119 258 IPR036388 -
Acco02g1414 584 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 113 392 IPR027725 -
Acco02g1414 584 Coils Coil 283 303 - -
Acco02g1414 584 SUPERFAMILY "Winged helix" DNA-binding domain 123 257 IPR036390 -
Acco02g1414 584 PRINTS Heat shock factor (HSF) domain signature 165 177 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1414 584 PRINTS Heat shock factor (HSF) domain signature 127 150 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1414 584 PRINTS Heat shock factor (HSF) domain signature 178 190 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1414 584 MobiDBLite consensus disorder prediction 1 38 - -
Acco02g1414 584 Pfam HSF-type DNA-binding 127 257 IPR000232 GO:0003700|GO:0006355|GO:0043565
Acco02g1414 584 MobiDBLite consensus disorder prediction 388 416 - -
Acco02g1414 584 MobiDBLite consensus disorder prediction 559 584 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1414 Acco-ChrAcco02 10640206 10642534 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1414 73 559 HSF AT5G03720 39.563 8.12e-87 274
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Acco02g1414 HSF_DNA-bind 1.9e-27 CL0123