Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1406 ATGACACCGAAGAAAGAAAATGGGATTATTGATGTAACTAACAAGAAGCACAATACTACTAATCATTTTCTGATATGGTTTTTTCCCCCTATTGGGTGGGTCTCTCGGGAAGTTATAGCTCTTTTATATATATTGCTGCGGAACACGGTCTCCAACCCAGAAATCCAACACAAAGCTGGCTTACACCCCAATGCTCCACACGCTGCAGTTCATAAACAACTGGTTTGCACTTTCATCTCCGATCTTTGTTCCCTTTCACTCAGATTCCAAGCCCCCATAAATGATGTCTTCCCTCAACTTCCAACCGCCACGGAATCTCACCAATTTCAATCTCAAAAAACTGCCAAGACGATGCATCCCAATAATACTCAGTCCAGTTCTGCCAGCTCTCCCATCGGAGCTAGCAGCAGCAGCGGTGCAGCCGCCGGGCGTCACCCGGTGTACCGGGGGGTGAGGCGTCGGAGCAGCGGGAAATGGGTCTCTGAAATTCGCGAGCCCAGGAAGCCCAATAGGATATGGTTAGGTACATTCCCTACCCCTGAAATGGCTGCCATTGCCTATGACGTGGCTGCCCTTGCCCTCAAGGGCAGCGACGCTGACCTTAACTTCCCTGACTCCGCTTCTTCGCTGCCCGTCCCAGCCTCTGGCTCTGCCCGTGATATTCAGATTGCCGCGGCCAGCGCCGCCGCTGCGGCCGGGGCAGCCGGGGATGCCTTGTCCGGGCCCAATGAACAAGGCAATGCTAACGTTAGTGTATCCGAGGGACAACAATCTGTTGGGGCTGATGAGTTTGTGGACGAGGATTTGATCTTTGATTTACCTAATGTTCTTGTCAATATGGCTGAAGGAATGCTTCTCACTCCTCCCCCTCTGGATTTTACTGGCAACAACGACGATGCTGATGGTTCTGCCGGAGGAAATGTCGGTGGTGATGATCAAAACCTTTGGAAATTTCCATAA 960 0.5115 MTPKKENGIIDVTNKKHNTTNHFLIWFFPPIGWVSREVIALLYILLRNTVSNPEIQHKAGLHPNAPHAAVHKQLVCTFISDLCSLSLRFQAPINDVFPQLPTATESHQFQSQKTAKTMHPNNTQSSSASSPIGASSSSGAAAGRHPVYRGVRRRSSGKWVSEIREPRKPNRIWLGTFPTPEMAAIAYDVAALALKGSDADLNFPDSASSLPVPASGSARDIQIAAASAAAAAGAAGDALSGPNEQGNANVSVSEGQQSVGADEFVDEDLIFDLPNVLVNMAEGMLLTPPPLDFTGNNDDADGSAGGNVGGDDQNLWKFP 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1406 319 SMART rav1_2 147 210 IPR001471 GO:0003700|GO:0006355
Acco02g1406 319 FunFam Ethylene-responsive transcription factor 2 146 205 - -
Acco02g1406 319 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 110 317 IPR045277 GO:0003700
Acco02g1406 319 Gene3D AP2/ERF domain 147 205 IPR036955 GO:0003700|GO:0006355
Acco02g1406 319 MobiDBLite consensus disorder prediction 104 137 - -
Acco02g1406 319 Pfam AP2 domain 146 196 IPR001471 GO:0003700|GO:0006355
Acco02g1406 319 MobiDBLite consensus disorder prediction 290 319 - -
Acco02g1406 319 MobiDBLite consensus disorder prediction 104 161 - -
Acco02g1406 319 SUPERFAMILY DNA-binding domain 147 206 IPR016177 GO:0003677
Acco02g1406 319 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Acco02g1406 319 PRINTS Ethylene responsive element binding protein signature 186 206 IPR001471 GO:0003700|GO:0006355
Acco02g1406 319 CDD AP2 148 206 IPR001471 GO:0003700|GO:0006355
Acco02g1406 319 MobiDBLite consensus disorder prediction 236 255 - -
Acco02g1406 319 ProSiteProfiles AP2/ERF domain profile. 147 204 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1406 Acco-ChrAcco02 10558378 10560142 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1406 133 319 AP2-EREBP Transcription Factor Family AT2G36450 61.780 2.44e-56 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco02g1406 AP2 1.2e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1406 02 10558378 10560142 Acco06g0897 06 5993572 5994330 CCT
Acco02g1406 02 10558378 10560142 Acco02g1406 02 10558378 10560142 ECH