Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1363 ATGTCCTCAATTCTCACAAAACCGTCGCTAAATGCATCCCCTTTCCATTCTTCAATCCACAGCCTAAAACTGAGACCCATATCCCTTTTCCCCATTCAACGATTCTCTAGACTCCCCCAACTTCGAGTTTCCCGTACAATCCATAACTCCGCCAATCGTCCTTCCATTACTCCTCCAAAGTGCAAAGCTTCCAATACTCTCTCACTCACTCAGACTCTTCACTTCCTCAAACCCTGGCTTCTCTCTGAGCAAAAAACCGTCCTCTTGGGCTGGCTCTGCAGCGTCATATCTGTTTACTCCCTCTCCAAAATTGTTTCTAAAGTCGGCAATGTTTCTGCTACTATCAGCAGCATTGACGCTATCAAGTTGCGAGACGAAGGTTTAGTATTTGGGGGTTTGGTGATTGCCCGGTCGGTTGCAAGCTATGGGCAGCAAGCCTTTTTATGGGAAGCTGCCCTGAACGCGGTATATAAGCTTAGGATTCACGTTTTCGACAGGATTTTGCAGAGAGAATTGGGATATTTTGAAGGCAAGGATGGTGTTTCATCAGGGGACATTGCTTATCGGATCACTGCGGAAGCTTCGGATATTGCTGAGACTTTATATGCCCTGCTCAATACCATAATCCCCAGCACCCTGCAGCTATCAGCTATGATGATGCGAATGTTGGTGATCAGTCCTGTCCTTTCATTGATTTCAGCTGCGGTTATTCCTTGTATGGCACTTGTTGTTGCCTTTCTTGGTCAGAAACTCCGTTCAATATCTAGAAAGGCACATCTTAGCGTTGCCACTCTCTCAGCATATCTAAATGAGGTCCTTCCAGCAATCCTTTTTGTGAAAGCAAACAATGCAGAACTGTGTGAGAGTAGCAGGTTTAAGAGGCTGGCTAAGATTGACTTTTTTGAACACCTGAACAAGAAGAGGATGAAGGCAGTTATTCCTCAGATTATCCAAGCTATTTATGTTGGAGTTCTATTTATACTTTGCGCTGGTTCAATAGTGGTTTCAAGAGGATCGTTCAATGGCTGTAACTTGGTTTCGTTTGTGACATCATTGCTCTTTTTGATTGAACCAATCCAGGATGTTGGAAAAGCATACAATGAATTGAGGCAGGGAGAACCAGCTATTGAACGCTTGTTTGATATGACCAGGTTCACAGATAAGGTGGTTGAAAAACCAGATGCTGTTGATTTAGACTCTGTTAGAGGGGAGATAAAGTTTTGTAACGTCTCATTTAAGTACAGTGAAGACACGTCACTTGTTCTGAATGGACTAAATCTTCACATTGGAGTTGGAGAGATAGTTGCTCTCGTTGGTCCCTCTGGTGGAGGGAAAACAACCCTTATCAAACTATTGCTTCGACTTTATGATCCAGTATCTGGCTGTATACTTATTGATAATCATGACATCCAAAGCATTCGGTTGCAAAGTTTGAGAAGACATGTTAGTCTTGTCTCTCAGGATATAACACTTTTTTCAGGATCAGTTGCTGAGAACATTGGTTATAAGGATCTGACAGCAAAAATTGATATGGAGAGGGTAAAATATGCAGCACAAACTGCTAATGCTGATGAATTTATAAGAAAACTTCCAGAAGGATATAATACCAATATTGGACCAAGGGGCTCAACTTTAAGTGGAGGACAAAGGCAAAGGCTAGCCATTGCCAGGGCTCTATATAAGAATTCTTCTATATTAATACTGGATGAGGCAACTTCTGCTTTAGATAGCAAATCTGAGTTATTGGTGAGACAAGCTGTAGTGCGATTGATGAAAAATCACACAGTGCTGGTAATTGCCCATCGAATGGAAACGGTTCGGATGGCCAATCGAGTATTCCTCTTGGATAAGGGGAAGCTGGAAGAGTTGCCTCGTTCTACTATATTGGGGGGTCACAAGGACTCGTCGTTATCATCTGGTGTGGTGATTTAA 1932 0.4275 MSSILTKPSLNASPFHSSIHSLKLRPISLFPIQRFSRLPQLRVSRTIHNSANRPSITPPKCKASNTLSLTQTLHFLKPWLLSEQKTVLLGWLCSVISVYSLSKIVSKVGNVSATISSIDAIKLRDEGLVFGGLVIARSVASYGQQAFLWEAALNAVYKLRIHVFDRILQRELGYFEGKDGVSSGDIAYRITAEASDIAETLYALLNTIIPSTLQLSAMMMRMLVISPVLSLISAAVIPCMALVVAFLGQKLRSISRKAHLSVATLSAYLNEVLPAILFVKANNAELCESSRFKRLAKIDFFEHLNKKRMKAVIPQIIQAIYVGVLFILCAGSIVVSRGSFNGCNLVSFVTSLLFLIEPIQDVGKAYNELRQGEPAIERLFDMTRFTDKVVEKPDAVDLDSVRGEIKFCNVSFKYSEDTSLVLNGLNLHIGVGEIVALVGPSGGGKTTLIKLLLRLYDPVSGCILIDNHDIQSIRLQSLRRHVSLVSQDITLFSGSVAENIGYKDLTAKIDMERVKYAAQTANADEFIRKLPEGYNTNIGPRGSTLSGGQRQRLAIARALYKNSSILILDEATSALDSKSELLVRQAVVRLMKNHTVLVIAHRMETVRMANRVFLLDKGKLEELPRSTILGGHKDSSLSSGVVI 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1363 643 FunFam ABC transporter related 74 385 - -
Acco02g1363 643 CDD ABC_6TM_exporters 127 379 - -
Acco02g1363 643 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 405 642 IPR003439 GO:0005524
Acco02g1363 643 FunFam ABC transporter ATP-binding protein 398 639 - -
Acco02g1363 643 SMART AAA_5 431 619 IPR003593 GO:0016887
Acco02g1363 643 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 88 371 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Acco02g1363 643 Gene3D ABC transporter type 1, transmembrane domain 60 384 IPR036640 GO:0005524|GO:0016020
Acco02g1363 643 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 394 623 IPR027417 -
Acco02g1363 643 Pfam ABC transporter 422 573 IPR003439 GO:0005524
Acco02g1363 643 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 60 622 IPR039421 -
Acco02g1363 643 SUPERFAMILY ABC transporter transmembrane region 80 384 IPR036640 GO:0005524|GO:0016020
Acco02g1363 643 Gene3D - 395 635 IPR027417 -
Acco02g1363 643 ProSitePatterns ABC transporters family signature. 545 559 IPR017871 GO:0005524|GO:0016887
Acco02g1363 643 Pfam ABC transporter transmembrane region 121 358 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1363 Acco-ChrAcco02 10218338 10222633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1363 83 634 Calmodulin-binding Proteins AT2G36910 29.217 1.60e-53 196