Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1332 ATGGAACCAATCCAAAACATCGACGCGTGCAATAAACGCGCTTTCAACTCAGAGGAAGAAGAAGAGGACCAAAAGGAGGCCATGTTCGAGAAGGCGTTAACGCCCAGCGACGTGGGGAAGCTGAACCGTCTGGTGATCCCGAAACAGCACGCCGAGAAGTACTTCCCACTCGGCGGCGGCGGGGCCGCCGTCGACACCAAGGGCGTGTTGCTGAGTTTCGAGGACGAGTCCGGCAAATTCTGGCGCTTCCGATACTCTTATTGGAACAGTAGCCAGAGTTACGTCTTGACCAAAGGCTGGAGCCGTTACGTTAAGGACAAGCGCCTCGACGCCGGCGACGTCGTTTCCTTTCACCGTCACCTTACAGACACTCACCGCCTTTTCATCTGCTGGAGGCGCCGCCACCCTCATGCGGGTCCACCAGTCACCAGAGTTGGGCATGGCGCGGTGGGTGTAGGATGGACCACCCCTACACCTTTCTATTCCGGTCACACTTATCCCGAGCCGCCTCAGCTTGTGTCACACCAACCTCAAAACCTTCCTGCATCAGGAAGTGGTTTACCGGCTCAGAGGACGGTGGTGGGAAACAGTTCAAGTAAGGTACTGAGACTGTTCGGAGTAAACATGGAATGCCAAGTTGAAGTAGATGGATCAGGACCGTCCACATCCCACAACTCCTCCAACGTCTCATCATCATCTACCCCTAACCATTTCTACCATTATGATCATCCTCATCTTTCTTATGCTTCCATTCCTTAA 759 0.5402 MEPIQNIDACNKRAFNSEEEEEDQKEAMFEKALTPSDVGKLNRLVIPKQHAEKYFPLGGGGAAVDTKGVLLSFEDESGKFWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVSFHRHLTDTHRLFICWRRRHPHAGPPVTRVGHGAVGVGWTTPTPFYSGHTYPEPPQLVSHQPQNLPASGSGLPAQRTVVGNSSSKVLRLFGVNMECQVEVDGSGPSTSHNSSNVSSSSTPNHFYHYDHPHLSYASIP 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1332 252 CDD B3_DNA 28 125 IPR003340 GO:0003677
Acco02g1332 252 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 231 IPR044800 GO:0003700
Acco02g1332 252 ProSiteProfiles B3 DNA-binding domain profile. 29 135 IPR003340 GO:0003677
Acco02g1332 252 Gene3D - 23 139 IPR015300 -
Acco02g1332 252 MobiDBLite consensus disorder prediction 215 236 - -
Acco02g1332 252 Pfam B3 DNA binding domain 29 134 IPR003340 GO:0003677
Acco02g1332 252 SUPERFAMILY DNA-binding pseudobarrel domain 25 135 IPR015300 -
Acco02g1332 252 SMART B3_2 29 135 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1332 Acco-ChrAcco02 9949938 9951143 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1332 22 217 RAV Transcription Factor Family AT5G06250 53.302 4.03e-64 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Acco02g1332 B3 5.9e-29 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1332 02 9949938 9951143 Acco06g0966 06 6432681 6434266 CCT
Acco02g1332 02 9949938 9951143 Acco02g1332 02 9949938 9951143 ECH