Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1328 ATGGGGCGCGTCCGAACCAAAACCGTTAAGAAGTCTTCTCGCCAAGTAATAGAGAAGTATTACTCTCGAATGACCCTGGATTTTCACACAAACAAGAAAATTCTGGAGGAGGTAGCTCTTATTCCCTCCAAGAGGCTGCGTAATAAGATTGCCGGATTCTCCACCCACCTGATGAAGAGGATTCAGAAGGGTCCCGTTCGGGGCATTTCCCTCAAGCTTCAAGAGGAGGAGCGTGAGCGCAGAATGGATTTCGTGCCCGACGTTTCTGCAATTAAGACGGATCAGATTGAGGTCGATAAGGAGACTCTTGATATGCTCAACGCTCTTGGCATGAACGACATTCCAGGGATTGTCCAAGTTGATCCTGTTCCCGTTCAGCAATCCTTTGGATTTGGCCGCGGTGGTTTTGGTGGAGCCGGCAGGAGTTGCGATTCATATATCTCTTTCTTGAAACGTGAATCATTTCCTGATGGATTAATGCCAAAAGCAAAAGCAGATTATTCTCTTGCAAGAGGGACATTTTCGTAG 528 0.4716 MGRVRTKTVKKSSRQVIEKYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPDVSAIKTDQIEVDKETLDMLNALGMNDIPGIVQVDPVPVQQSFGFGRGGFGGAGRSCDSYISFLKRESFPDGLMPKAKADYSLARGTFS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1328 175 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
Acco02g1328 175 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Acco02g1328 175 PANTHER 40S RIBOSOMAL PROTEIN S17 1 127 IPR001210 GO:0003735|GO:0005840|GO:0006412
Acco02g1328 175 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Acco02g1328 175 FunFam 40S ribosomal protein S17 1 62 - -
Acco02g1328 175 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Acco02g1328 175 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1328 Acco-ChrAcco02 9914556 9916184 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1328 1 134 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 83.333 3.08e-78 228