Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1298 ATGAACCCAGGCTACATCCAGTACTCCGAGCCACCTCCTCCGCCGCAGCCATCGCATCCTGGCAACCTCGTCTTCCTCAATTCCGCAAACAACTCACTCCCTCCCCAAACCCTACAACACGCGCCGCCTTCTCACACTCAACAATTCGTCGGCATCCCTCTCCCCGCCGCCTCCTCCCAAGAGCCCTCGCACCACTCCGTGCATCCCCATCATGATGTCTCTGCTTTGCATGGATTCTTGCCCCTCATGCAGTACAACCACTGGAGCACAGTTCACTCCAACGCTGCGGCGGCGGCGAGTGATACCCCACGTTCTCAACAGGGTCTGTCCCTCAGCCTTTCTTCTCAGCAGGCAGGGATGGGTTCTTTCCGGGTCGAACGGGACGTACCATCACAGGGTCAGGCACCAGCCATGTCAGGGGATGATGTTCGCGCGTCAGGTGGGTCATCGTCTTCGGCCTCTGGAGTTACTAATGGCGTTTCAGGGATACGGAGTGTGCTTCTGGGTTCTAAGTACTTGAAGGCAGCCCAGGAACTTCTAGACGAGGTCGTCAACGTCAACGTTGGGATAAAGAGCGAAATGGCCAAGAAAAGTAACAGCCAGACAAAGACGATTAAAGAGTCTCCCACGGCGGCAAGTGGAGATGGTTCCCCGGCCGGAGAAGGAACCGCCATGCCCATCCCTGAGCTCTCAACCGCGGAGAAACAAGATATTCAGATGAAGAAGGCAAAGTTAATCAGCATGCTTGAAGAGGTGGAGCAGAGGTACCGACAGTATCATCATCAGATGCAGATAGTGAGTTCTTCATTTGAACAAGCAGCAGGGATTGGGTCGGCGAGGACATACACAGCACTGGCACTACAAACGATCTCGAAGCAGTTTCGGTGTTTGAAAGATGCAATAATGGGTCAAATCAGAGCTGCCAACAAGAGCTTAGGAGAGGAAGATTGCTTCGGCACAAAAATGGAAGGTTCGAGGCTTAAATACGTGGACCATCATCTTCGCCAACAGCGAGCTCTCCAACAATTGGGAATGATCCAGCACAATGCTTGGAGACCCCAGAGAGGATTGCCTGAAAGATCTGTCTCTGTTCTTCGCGCTTGGCTCTTCGAGCACTTCCTCCACCCTTACCCCAAGGACTCAGACAAACACATGCTTGCAAAACAAACAGGGCTCACCAGGAGCCAGGTCTCAAATTGGTTCATAAATGCGCGTGTACGATTGTGGAAGCCGATGGTCGAAGAAATGTACATGGAGGAGATGAAGGAGCAAGAACAGAACGGTGGGGAGGAGAAATCAAGCAAGAGCAGTGAAGATCCTGCCATGGCAATCCCACAAGAGAGATCTCCTGCCTCTGCCACCGAACCCAAAAGCTTGAATTTCAAACATGACGTTTCCACAAATCCCAACACTCCAACAGTTTCAGTATCTACGCCGTCAACATCACCGGTCGGAGGAAATGCCAGAAACCGCCCAGGGTTCAGCTTCATGGGGACTTCAGAGTTAGATGGGATCGCACAACCGAGTCCCAAGAAACCAAGAAACCATGAGATTCTGCAGTCCCAAATCAACGTTGTTGATGTGAAGCCTGAAGATGCAGGGAATGGGCAAATCTCCATGAAGTTTGGGGATGAGAGGCAGAGCAGAGATGGGTACTGTTTCATGGGGAATCAGACGAACTTCATTGGGGGATTTGGGCAATACCCAATTACAGAAATTGATAGGTTTGAGGCAGAGCAATTCACACCAAGGTTCTCAGGTAATAATGGGGTTTCCCTCACTCTTGGTCTTCCTCACTGTGACTCATTATCAGCAGCAACACATCAAACATTTCTACGAAACCAGAGCATTCAACTTGGGAGAAGGATGGAGCTAGGTGAACCAAACGAGTTTGGTGGCATAACCTCTTCGACTGCTCTCTCTTCAGCTGCATTTGAGAATATGAATATGCAGAACCCAAAGAAGTTTGCTGCACGATTGTTGCCAGACTTTGTGGCTTGA 2001 0.5097 MNPGYIQYSEPPPPPQPSHPGNLVFLNSANNSLPPQTLQHAPPSHTQQFVGIPLPAASSQEPSHHSVHPHHDVSALHGFLPLMQYNHWSTVHSNAAAAASDTPRSQQGLSLSLSSQQAGMGSFRVERDVPSQGQAPAMSGDDVRASGGSSSSASGVTNGVSGIRSVLLGSKYLKAAQELLDEVVNVNVGIKSEMAKKSNSQTKTIKESPTAASGDGSPAGEGTAMPIPELSTAEKQDIQMKKAKLISMLEEVEQRYRQYHHQMQIVSSSFEQAAGIGSARTYTALALQTISKQFRCLKDAIMGQIRAANKSLGEEDCFGTKMEGSRLKYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERSVSVLRAWLFEHFLHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEMKEQEQNGGEEKSSKSSEDPAMAIPQERSPASATEPKSLNFKHDVSTNPNTPTVSVSTPSTSPVGGNARNRPGFSFMGTSELDGIAQPSPKKPRNHEILQSQINVVDVKPEDAGNGQISMKFGDERQSRDGYCFMGNQTNFIGGFGQYPITEIDRFEAEQFTPRFSGNNGVSLTLGLPHCDSLSAATHQTFLRNQSIQLGRRMELGEPNEFGGITSSTALSSAAFENMNMQNPKKFAARLLPDFVA 666
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1298 666 Gene3D - 354 433 - -
Acco02g1298 666 ProSiteProfiles 'Homeobox' domain profile. 348 411 IPR001356 GO:0003677
Acco02g1298 666 Pfam Homeobox KN domain 368 407 IPR008422 GO:0003677|GO:0006355
Acco02g1298 666 MobiDBLite consensus disorder prediction 1 20 - -
Acco02g1298 666 MobiDBLite consensus disorder prediction 1 49 - -
Acco02g1298 666 MobiDBLite consensus disorder prediction 99 156 - -
Acco02g1298 666 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 75 437 - -
Acco02g1298 666 Pfam Associated with HOX 166 302 IPR006563 -
Acco02g1298 666 MobiDBLite consensus disorder prediction 99 121 - -
Acco02g1298 666 MobiDBLite consensus disorder prediction 21 49 - -
Acco02g1298 666 MobiDBLite consensus disorder prediction 451 488 - -
Acco02g1298 666 Coils Coil 235 262 - -
Acco02g1298 666 MobiDBLite consensus disorder prediction 421 437 - -
Acco02g1298 666 MobiDBLite consensus disorder prediction 421 489 - -
Acco02g1298 666 FunFam BEL1-like homeodomain protein 9 354 416 - -
Acco02g1298 666 SUPERFAMILY Homeodomain-like 352 418 IPR009057 -
Acco02g1298 666 SMART HOX_1 351 415 IPR001356 GO:0003677
Acco02g1298 666 CDD homeodomain 351 411 IPR001356 GO:0003677
Acco02g1298 666 MobiDBLite consensus disorder prediction 195 211 - -
Acco02g1298 666 SMART prehox3 161 303 IPR006563 -
Acco02g1298 666 MobiDBLite consensus disorder prediction 195 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1298 Acco-ChrAcco02 9653329 9655620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1298 23 666 Homeobox Transcription Factor Family AT2G35940 51.603 2.62e-173 508
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Acco02g1298 POX 1.6e-49 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1298 02 9653329 9655620 Acco06g1001 06 6734530 6737035 CCT
Acco02g1298 02 9653329 9655620 Acco02g1298 02 9653329 9655620 ECH