Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1297 ATGATGGATCAAATTGAGATTCCTGAGTATTTCATATGCCCCATATCCCTCCAAATCATGAAAGATCCCGTTACTGCCGTTACGGGCATCACATACGATCGTGAAAGCATCGAACGTTGGCTCTTCACCTCCAAAAACACCACTTGCCCAGTAACCAAACAGACTCTTCCGTTGGACTCCGACTTGACCCCCAACCACACCCTCCGCCGTCTCATTCAGGCTTGGTGCATTCAGCATGCCTCCCTCGGCGTCGATCGTATTCCCACACCCAAACCTCCCCTCGACAAGTTTCAGGTCCTCAAAATCCTCTCCCACCTTCGCAGCTCTCACCTCTATCTCAAAGCTCTTCGACAATTAGAACTTCTGGCTACCGAGAATGAGAGGAATAGGAAGTTTTTGGTGGAGGCTGGCGTCCCCAAAGCCATGGTCTTCTTTATTTTTGACTGTTTTAAGAAACGACAGATTCGCGAGGGCCTCCAAGAGGCCCTCAGTTTGTTGCAGTTTGTTAAGATTCCCAAAGAGGAAATCACGCTTCTCCTGCAACAAAACGATCAGGTCTTGGATTCTCTCACGTGGATTTTAGGTTGTGAGATAATGGACAACTCTGTGACTCTCAAGTCCCACGCGATTACAGTGTTAAAAAATATCGTCCAGAAGGCCAGCTCCGGCGTCATGGAGAGACTGAAACCTGAGTTCTTTGAAACAATTGTGAAAGTCCTACGAAATGGAATATCCCTCCAAGGAATGAACGCTGGTCTGAAAGTGCTATTAGCAGCTTGTCCGTGGGGAAGAAATCGAGAGTTAATGGTAAAGTCCGGTGCAGTTCATGAATTGATTGAGATTGATCTAGGCACGCCGGAGAAGAGAACGACGGAGCTGATATTAGAAATACAGTTTCATCTGTGTTCTTGTGCGAATGGGAGAGCACAGTTCGCGAGTCACCGAGGCGGCATTGCGGTGTTGACGGAGAGAATCCTGAAGGTGTCGTCAGCGGCGGATGAAAGAGCCATATTTGTTCTATCATTGGTATCAAAGTCATCTGCTTCGCAAGTAATAATACAGGAAATGGTTCAGCTAGGGACTTTGTGTAAGCTTTGCATGTTGCTTCAGGCGGATCATCCTTCGTATTTAAAAGACAAAGCAATGGAGATTCTCAAGTCACATACTGAGGTTTGGAAGAATTCTCCTTGCTTTCCTGCATCTTTTAAAGCAAGTTTCCACAGATGA 1227 0.4662 MMDQIEIPEYFICPISLQIMKDPVTAVTGITYDRESIERWLFTSKNTTCPVTKQTLPLDSDLTPNHTLRRLIQAWCIQHASLGVDRIPTPKPPLDKFQVLKILSHLRSSHLYLKALRQLELLATENERNRKFLVEAGVPKAMVFFIFDCFKKRQIREGLQEALSLLQFVKIPKEEITLLLQQNDQVLDSLTWILGCEIMDNSVTLKSHAITVLKNIVQKASSGVMERLKPEFFETIVKVLRNGISLQGMNAGLKVLLAACPWGRNRELMVKSGAVHELIEIDLGTPEKRTTELILEIQFHLCSCANGRAQFASHRGGIAVLTERILKVSSAADERAIFVLSLVSKSSASQVIIQEMVQLGTLCKLCMLLQADHPSYLKDKAMEILKSHTEVWKNSPCFPASFKASFHR 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1297 408 PANTHER WDSAM1 PROTEIN 4 399 IPR045185 GO:0061630
Acco02g1297 408 SUPERFAMILY RING/U-box 4 83 - -
Acco02g1297 408 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
Acco02g1297 408 ProSiteProfiles U-box domain profile. 6 82 IPR003613 GO:0004842|GO:0016567
Acco02g1297 408 CDD RING-Ubox_PUB 8 59 IPR045210 -
Acco02g1297 408 SMART Ubox_2 10 75 IPR003613 GO:0004842|GO:0016567
Acco02g1297 408 FunFam RING-type E3 ubiquitin transferase 1 85 - -
Acco02g1297 408 Pfam U-box domain 7 79 IPR003613 GO:0004842|GO:0016567
Acco02g1297 408 SUPERFAMILY ARM repeat 100 375 IPR016024 -
Acco02g1297 408 Gene3D - 97 395 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1297 Acco-ChrAcco02 9643572 9644798 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1297 3 398 U-box Gene Family AT3G11840 43.537 6.75e-118 349