Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1295 ATGCTGTACCCCTGCAAATCGCAAACATTGCAAGAAATCATGCTGGACAAAGTCTCGAATCCACCGCAGACGTTTCAGATTTCAGACATGGATGAGAATATTGAAGTTCCTACCTTCTTTTTGTGCCCAATCTCCCTGGAAATCATGAAGGATCCGATCACCGTCTCCTCCGGGATCACCTACGACAGAGAGAGCATCGAGAAATGGCTCTTCTCCGGCAAAAACAACACCTGCCCAGTTACCAAACTAACCCTCTCCGTATCAGACTCCTCCGACCTCGTTCCCAACCACACCCTCCGCCGTCTGATTCAATCCTGGTGTACCATCAATGCGTCTCACGGCATCCAGAGGATTCCGACGCCCAAACCTCCCGTCACCAAAACCCAAGTAGCTAAAATCATCAAAGACGCTTCTGGATCTTCTCTCTCACCTCTTAAATCTCTCCAAACACTCAAATCCATTGCTTCCGAGAGCGACGCCAACAAACGTACCTTAGAAGCCGCCGGTGCCCTTGACTTCTTAGCATCCATCGTACTCCGTCACACAAATTTCTCACACACAGCTGAAGACGCTAGCCTCTATGACGACAGCTTTGAGTTGAGAACAAGCGGAGGCGACGAAGCCTTAAGCATCCTCCATAGCCTCCGCATGTCCGACTCTGGCTTCAAAACTCTCGTAACCTTGGAAAACGGATCATTCATTGACTGCTTAACCAGAATCATGCAGAGAGGATTCTACGAGTCACGAGCTTACGCGGTCTTATTGTTAAAATCCATGTTTGAAGTGGCTGATCCAACGGTTTTATCCCATTTAAAACCTGAAATGTTCGTAGAGTTGGTTCAACTTTTGAAAGACCAGATATCTCAGCAGGCTTCCAAGGCTGCTTTAAGAACACTGATCCGAATATGTCCATGGGGCAGAAACAGAATAAGAGCAGTCGAAGCGGGGGGCGTAACGGTGTTGATAGAGCTTCTTTTGGATTGTAAGGAGAGGAAGCCGTGTGAGATGATGATGGTGTTGTTGGAGATGTTGTGTGGGTGTGCTGAGGGGAGGGCTGAGTTACTGAGTCATGGCGCGGGGATCGCCGTAGTTTCGAAGAAGATTCTGAGGGTGTCGACGATGGCGAATGACAGGGCGGCGAGGATTTTGTTGTCTATTGCCAAGTTCTCTGCGACTACTAGCGTTTTGCAGGAAATGTTGCAGGTTGGGGTGGTGGCGAAGTTGTGTTTGGTGCTTCAGGTGGAGAGTGGGAGAAAGGCTCAGGAGAAAGCTAGAGAGATTCTAAGAATGCATTCTCGGGCTTGGAGGAATTCTCCATGCATACCAACTAATCTGCTTTCTTCTTACCCGAATTGA 1356 0.4867 MLYPCKSQTLQEIMLDKVSNPPQTFQISDMDENIEVPTFFLCPISLEIMKDPITVSSGITYDRESIEKWLFSGKNNTCPVTKLTLSVSDSSDLVPNHTLRRLIQSWCTINASHGIQRIPTPKPPVTKTQVAKIIKDASGSSLSPLKSLQTLKSIASESDANKRTLEAAGALDFLASIVLRHTNFSHTAEDASLYDDSFELRTSGGDEALSILHSLRMSDSGFKTLVTLENGSFIDCLTRIMQRGFYESRAYAVLLLKSMFEVADPTVLSHLKPEMFVELVQLLKDQISQQASKAALRTLIRICPWGRNRIRAVEAGGVTVLIELLLDCKERKPCEMMMVLLEMLCGCAEGRAELLSHGAGIAVVSKKILRVSTMANDRAARILLSIAKFSATTSVLQEMLQVGVVAKLCLVLQVESGRKAQEKAREILRMHSRAWRNSPCIPTNLLSSYPN 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1295 451 SUPERFAMILY RING/U-box 32 113 - -
Acco02g1295 451 SUPERFAMILY ARM repeat 147 437 IPR016024 -
Acco02g1295 451 SMART Ubox_2 39 106 IPR003613 GO:0004842|GO:0016567
Acco02g1295 451 PANTHER WDSAM1 PROTEIN 32 442 IPR045185 GO:0061630
Acco02g1295 451 CDD RING-Ubox_PUB 37 89 IPR045210 -
Acco02g1295 451 FunFam RING-type E3 ubiquitin transferase 30 116 - -
Acco02g1295 451 ProSiteProfiles U-box domain profile. 35 113 IPR003613 GO:0004842|GO:0016567
Acco02g1295 451 Gene3D - 135 440 IPR011989 -
Acco02g1295 451 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 117 IPR013083 -
Acco02g1295 451 Pfam U-box domain 36 108 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1295 Acco-ChrAcco02 9615569 9618031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1295 30 450 U-box Gene Family AT2G35930 56.706 1.63e-173 491
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1295 02 9615569 9618031 Acco02g1295 02 9615569 9618031 ECH