Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1291 ATGCCATACTCTTCAATCTTTCTGTCTGTTTTTTTTTCTTTTAAGATTCTGATTTCTGTTTTTTTTTTTATCCTTTCTTGTTTTCTAATCCTTCCCTTTGAATCCCGGAAATCCTTTCGTCTAAAGATGAATGACTTGTTCTCTGACTCCTTCTCTCGCTTCCGGGGCGAGGAATCGTCACCGGACCATCACCAGCACCATGTCATCGAGATGGGTTCAGTCGCAGCCTCCACCGACGTCGGCAACCTCGACAAGTTCTTCAAGGATGTAGAATTTATAAAGGACGAGCTGAAAGAGCTCGAAAGACTGAACCAGAATCTGCAGAGTTCTCACGAGCAGAGCAAGACCCTTCACAATGCCAAGGCCGTCAAGGACCTTCGCTCTCGAATGGACGGCGACGTTGCTCTTGCTCTGAAGAAGGCCAAGCTCATCAAGGTCAAATTGGAGGCACTAGAGCGATCCAACGCCGCCACCCTGAACCTTCCTGATTGCGGACCCGGTTCGTCATCGGACCGGACTCGGACATCCGTGGTGAACGGTTTGAAAAAGAACCTGAAGGACTCCATGGACAGTTTCAATGAACTCAGGCAGCGGATCCTCGCCGAGTACCGGGAGACCGTGCAACGCAGATATTTCACCGTCACCGGCGAGAATCCCGACGAGAAGACCATCGACCTCCTGATTTCTACAGGTGAGAGTGAGACTTTCCTTCATAAAGCCATCCAAGAACAAGGTAGAGGAAGAATACTGGACACCATCAATGAAATTCAAGAGAGGCACGATGCGGTGAAAGATTTGGAGAAGAATCTGCAGGAGTTGCATCAAGTGTTCCTGGAAATGGCAGTGCTGGTGCAATCCCAAGGTAAGCAATTGGATGATATTGAAAGCCACGTGGCGAGAGCGAGCTCGTTTGTGAAGAGGGGGACCCAGAAGCTACAGACAGCAAGGAAGCACCAGAAGAACACCAGGAAGTGGACCTGCTATGCCATTACGCTTCTGCTTGTGATCATCTTGATCGTGGTGCTCTTCACTGTGAGACCATGGCAAAATAATGGTGGTAGTTCGCCGTCGTCGTCACCACAGACACCTGCGGTTGCACCGCCGCCACCTCCTCCTCCTTCGGCTTAA 1128 0.5009 MPYSSIFLSVFFSFKILISVFFFILSCFLILPFESRKSFRLKMNDLFSDSFSRFRGEESSPDHHQHHVIEMGSVAASTDVGNLDKFFKDVEFIKDELKELERLNQNLQSSHEQSKTLHNAKAVKDLRSRMDGDVALALKKAKLIKVKLEALERSNAATLNLPDCGPGSSSDRTRTSVVNGLKKNLKDSMDSFNELRQRILAEYRETVQRRYFTVTGENPDEKTIDLLISTGESETFLHKAIQEQGRGRILDTINEIQERHDAVKDLEKNLQELHQVFLEMAVLVQSQGKQLDDIESHVARASSFVKRGTQKLQTARKHQKNTRKWTCYAITLLLVIILIVVLFTVRPWQNNGGSSPSSSPQTPAVAPPPPPPPSA 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1291 375 Pfam Syntaxin 85 288 IPR006011 GO:0016020
Acco02g1291 375 CDD SynN 83 240 IPR006011 GO:0016020
Acco02g1291 375 SMART SynN_4 78 204 IPR006011 GO:0016020
Acco02g1291 375 Coils Coil 178 198 - -
Acco02g1291 375 FunFam Syntaxin 132 246 346 - -
Acco02g1291 375 Pfam SNARE domain 290 341 IPR000727 -
Acco02g1291 375 Gene3D - 250 346 - -
Acco02g1291 375 Gene3D - 81 213 - -
Acco02g1291 375 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 253 315 IPR000727 -
Acco02g1291 375 PANTHER SYNTAXIN 100 340 IPR045242 -
Acco02g1291 375 SMART tSNARE_6 248 315 IPR000727 -
Acco02g1291 375 Coils Coil 253 276 - -
Acco02g1291 375 Coils Coil 83 120 - -
Acco02g1291 375 MobiDBLite consensus disorder prediction 361 375 - -
Acco02g1291 375 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 80 210 - -
Acco02g1291 375 ProSitePatterns Syntaxin / epimorphin family signature. 259 298 IPR006012 GO:0005484|GO:0006886|GO:0016020
Acco02g1291 375 CDD SNARE_syntaxin1-like 252 314 - -
Acco02g1291 375 SUPERFAMILY t-snare proteins 82 308 IPR010989 GO:0016020|GO:0016192
Acco02g1291 375 MobiDBLite consensus disorder prediction 351 375 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1291 Acco-ChrAcco02 9579726 9581417 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1291 71 372 SNARE and Associated Proteins AT3G11820 71.104 1.47e-150 426