Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1287 ATGGCCGCCTCAACCGCTCCTTCCTCTTCCCTCTGCAATCGGCCCCACAGCCTCTATGTCACTTCTTCTTCCTTCTCAATTACCCTCAAATTCCCTCCCACGCCCATTTCTCATAAACCTCCCAATCTCAATCTCAAATCTCACTCCCTCACTCCCTCTCCTCTCTCACTCTACCATCTTCGTTTGGCTTCTGCTGCTTTCGATGGATTCGAAGTCGCTCAAGACAGCACTGACGCTGAGCAGGTCCAAGAGCCAGAAGCCGAACGCTCTGAAAATTCAGAACCAGAGGAGGATGACCAGAAGGTATCTGACTCAAACGAAGCTGGAAGGATCTATGTGGGAAATTTGCCCTTCTCGATGACTTCTTCTCAGTTATCCGAGATTTTTCAAGAGGCTGGCAATGTGGTGTCTGTAGAGATAGTATATGATCGCGTCACGGATAGAAGCAGAGGATTTGCCTTTGTCACGATGGGAAGCGTTGATGAAGCTAAAGAAGCCATTCGGATGTTTGATGGCTCTCAAGTTGGAGGTAGGACGGTGAAGGTAAACTTCCCAGAAGTGCCAAGAGGAGGTGAAAGGCTAGTGATGGGGCCAAAAGTAAGGAACAACTACAGAGGCTTCGTAGACAGTCCTCACAAGATATACGCTGGAAACCTTGGATGGGGATTGACTTCACAGGGTCTGAGAGATGCTTTTGCTGGTCAGCCTGGTTTTTTGAGTGCCAAGGTCATCTATGAAAGGGACACTGGAAGATCTCGAGGCTTCGGGTTTGTCTCCTTTGAAACTGCTGAGGAAGTTGAGGCTGCTTTGACTGCTATGAATGGTGTGGAGGTTCAAGGCAGGGCTCTGAGACTGAATTTGGCTACAGATAGGACAAGCGGATCTCCTCCAACAACGGATGAAACTGCACAAGCTAATGTGGATAGCTCGGAGTTGATGTCTAGTGTGAGCACATGA 957 0.489 MAASTAPSSSLCNRPHSLYVTSSSFSITLKFPPTPISHKPPNLNLKSHSLTPSPLSLYHLRLASAAFDGFEVAQDSTDAEQVQEPEAERSENSEPEEDDQKVSDSNEAGRIYVGNLPFSMTSSQLSEIFQEAGNVVSVEIVYDRVTDRSRGFAFVTMGSVDEAKEAIRMFDGSQVGGRTVKVNFPEVPRGGERLVMGPKVRNNYRGFVDSPHKIYAGNLGWGLTSQGLRDAFAGQPGFLSAKVIYERDTGRSRGFGFVSFETAEEVEAALTAMNGVEVQGRALRLNLATDRTSGSPPTTDETAQANVDSSELMSSVST 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1287 318 PANTHER OS02G0815200 PROTEIN 37 291 - -
Acco02g1287 318 CDD RRM1_PSRP2_like 110 189 - -
Acco02g1287 318 Gene3D - 197 299 IPR012677 -
Acco02g1287 318 CDD RRM2_NsCP33_like 213 288 - -
Acco02g1287 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 109 187 IPR000504 GO:0003723
Acco02g1287 318 SMART rrm1_1 110 183 IPR000504 GO:0003723
Acco02g1287 318 SMART rrm1_1 213 286 IPR000504 GO:0003723
Acco02g1287 318 FunFam 33 kDa ribonucleoprotein, chloroplastic 194 298 - -
Acco02g1287 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 212 290 IPR000504 GO:0003723
Acco02g1287 318 MobiDBLite consensus disorder prediction 73 106 - -
Acco02g1287 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 214 284 IPR000504 GO:0003723
Acco02g1287 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 111 181 IPR000504 GO:0003723
Acco02g1287 318 MobiDBLite consensus disorder prediction 289 318 - -
Acco02g1287 318 SUPERFAMILY RNA-binding domain, RBD 106 186 IPR035979 GO:0003676
Acco02g1287 318 Gene3D - 67 192 IPR012677 -
Acco02g1287 318 SUPERFAMILY RNA-binding domain, RBD 209 295 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1287 Acco-ChrAcco02 9567270 9568710 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1287 111 288 Eukaryotic Initiation Factors Gene Family AT3G16380 31.868 7.59e-19 85.1