Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1239 ATGAGAACTTCATGGGCAGATTCTGTCGACAACTCAGCCGATGGTCCTCCAAGTGCCAATGCCGTGCGTCCTTCTCGATCAGCATATGTTCCACCACATCTTCGTAATAAGCCACCATCTTCAGAACCCCCTTTGACGTCACACCCATCTTCGTTACCGGTCAATGATCGGGCAAATTTTGTTGGGTCAACCGCTGGGTACCGCGGAGGCAGTTCCTTTAACAAACCTGACTATGGAAGGCAGGACTATGGTTCTGGTGGTCGAATTGGTGGGGGCTGGAACAATAGAGGCGGAGGGTGGGACCGTGGAAGGGAGCGTGAGGTTAACCCATTTGAGAGTGATGAAGCTACAGATCTTACTCTTAGTGAGCAAGAAAACACAGGCATTAACTTCGACGCTTATGATGATATCCCTGTGGACACTAGTGGGGAGAATGTGCCTCCCCCTGTAAATACTTTTGCTGAAATAGACTTGGGCGAGGCATTGAATCAAAATATAAAGAGGTGTAAATACGTCAAACCAACTCCAGTTCAGAGGCACGCCATACCAATTTCTCTTGCGGGGCGAGATCTGATGGCTTGCGCCCAGACAGGATCAGGCAAGACAGCTGCCTTCTGTTTTCCTATCATAAGTGGAATTCTGAGGATGCCACATGTTCAAAGACCACGTGTAGCACGAACTGCTTTCCCTCTAGCTCTTATCCTATCTCCTACCCGGGAGCTTTCATGTCAGATACATGACGAGGCTAAAAAGTTTTCCTATCAAACTGGTGTTAAGGTGGTGGTTGCTTACGGCGGAGCACCAATAGTTCAACAGTTGCGGGAGCTTGAGAGAGGAGTTGATATTCTTGTGGCAACTCCAGGACGTCTGGTAGATTTGTTAGAGAGGGCTAGGGTATCACTGCAAATGATCAGATATTTAGCTCTCGATGAGGCAGATCGGATGCTGGATATGGGTTTTGAGCCTCAAATAAGAAAAATAGTTGAACAAATGGACATGCCTCTTCAAGGCATGAGACAAACAATGCTGTTTAGTGCCACTTTTCCTAAAGAGATACAGAGACTTGCATCAGATTTCCTTGACAATTATGTGTTTCTGGCTGTTGGAAGGGTTGGTTCAAGTACTGACCTAATTGCTCAACGAGTGGAATATGTCCTGGAATCTGACAAAAGAAGCCACCTCATGGACCTTCTTCACGCCCAGAAGGAAAATGGAATTTATGGCAAGCAAGGTCTGACATTAGTTTTTGTGGAAACAAAGAAAGGAGCTGATGCATTGGAAAACTGGCTGTACATGAATGGGTTTCCTGCAACTAGCATTCATGGTGACCGATCACAGCAGGAAAGGGAACTGGCGTTGAGGTCGTTCAAGAGTGGAAACACACCAATTTTAGTGGCAACAGATGTTGCAGCACGCGGGCTTGATATTCCACGTGTAGCTCATGTGGTAAATTTTGATCTTCCCAATGACATTGATGATTATGTGCATCGGATTGGAAGAACAGGGAGGGCTGGTAAAATGGGTTTAGCAACAGCCTTCTTCAATGACAATAATCTGTCAATGGCAAAGCCATTGGCTGATCTGATGCAAGAGGCAAATCAAGAAGTACCTGCCTGGCTCACACGTTATGCATCTAGAGTTCACCATAGTGGTGGCAACAGAAACCGGCGTTCTGGGGGACCCCGTTTTGGTGGCCGTGATTATAGGAGGGACAGTCAACATAATAAAGGAGTTGACTACTATGGTGGAGCAAGTGGATATGGGGTTCCTGCCACTTATGGTGGAGGGTATGGTCCTCCAGGAGTTACCAGCGCTTGGGATTAG 1824 0.4698 MRTSWADSVDNSADGPPSANAVRPSRSAYVPPHLRNKPPSSEPPLTSHPSSLPVNDRANFVGSTAGYRGGSSFNKPDYGRQDYGSGGRIGGGWNNRGGGWDRGREREVNPFESDEATDLTLSEQENTGINFDAYDDIPVDTSGENVPPPVNTFAEIDLGEALNQNIKRCKYVKPTPVQRHAIPISLAGRDLMACAQTGSGKTAAFCFPIISGILRMPHVQRPRVARTAFPLALILSPTRELSCQIHDEAKKFSYQTGVKVVVAYGGAPIVQQLRELERGVDILVATPGRLVDLLERARVSLQMIRYLALDEADRMLDMGFEPQIRKIVEQMDMPLQGMRQTMLFSATFPKEIQRLASDFLDNYVFLAVGRVGSSTDLIAQRVEYVLESDKRSHLMDLLHAQKENGIYGKQGLTLVFVETKKGADALENWLYMNGFPATSIHGDRSQQERELALRSFKSGNTPILVATDVAARGLDIPRVAHVVNFDLPNDIDDYVHRIGRTGRAGKMGLATAFFNDNNLSMAKPLADLMQEANQEVPAWLTRYASRVHHSGGNRNRRSGGPRFGGRDYRRDSQHNKGVDYYGGASGYGVPATYGGGYGPPGVTSAWD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1239 607 SMART helicmild6 424 505 IPR001650 -
Acco02g1239 607 MobiDBLite consensus disorder prediction 1 106 - -
Acco02g1239 607 MobiDBLite consensus disorder prediction 1 15 - -
Acco02g1239 607 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 522 IPR027417 -
Acco02g1239 607 CDD SF2_C_DEAD 378 514 - -
Acco02g1239 607 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 151 179 IPR014014 GO:0003724
Acco02g1239 607 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 123 544 - -
Acco02g1239 607 Pfam Helicase conserved C-terminal domain 390 505 IPR001650 -
Acco02g1239 607 Gene3D - 107 368 IPR027417 -
Acco02g1239 607 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 393 544 IPR001650 -
Acco02g1239 607 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 182 366 IPR014001 -
Acco02g1239 607 CDD DEADc_DDX3_DDX4 152 372 IPR044763 GO:0003724|GO:0005524
Acco02g1239 607 SMART ultradead3 170 381 IPR014001 -
Acco02g1239 607 MobiDBLite consensus disorder prediction 560 575 - -
Acco02g1239 607 FunFam Probable ATP-dependent RNA helicase DDX4 114 368 - -
Acco02g1239 607 FunFam ATP-dependent RNA helicase RhlB 369 548 - -
Acco02g1239 607 Pfam DEAD/DEAH box helicase 175 355 IPR011545 GO:0003676|GO:0005524
Acco02g1239 607 Gene3D - 369 549 IPR027417 -
Acco02g1239 607 MobiDBLite consensus disorder prediction 549 575 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1239 Acco-ChrAcco02 9205298 9210252 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1239 149 537 Eukaryotic Initiation Factors Gene Family AT3G19760 31.122 1.15e-59 202