Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1222 ATGGCTCCTGGAGTAAATGCTTGCAAAGAATTTCAACCTCACCCGACAATTTCAGATTATGACGTAGCCAAGTCCAAACACAATGCTAAAAGTAGTAGTCCTCTTACAAAGTATAACGCTGACTTTGGTGGAAAACATGGTGGTAATTCGAAGAATGGGGTTCATGACTTACTTGAGTGCCCTAGTTGCAAGAATTTGATGTATCCCCCAATTTACCAGTGCCCAAATGGCCACACTTTATGTGCAAACTGTAAGACTACAGTGCATAACCGCTGCCCAACTTGTCACTTTGACCTAGGAAACATAAGATGTTTAGCCCTGGAGAAGTTGGCTAAGTCATTGGAACTTCCTTGCAGATATCAGAGTCTAGGTTGTCATGATATATTTGCATGCTATACCAAGCTCAAGCATGAGCAAAATTGTAGATTTCGTCCATATAATTGCCCCTATGCTGGATCTGAGTGCTCTGTGATGGGCAACATTCCAACTCTTGTCAGCCATCTCAAGGATGATCACAAAGTTGACATGCATGATGGATGTACTTTCAACCATCGATATGTGAAATCAAACCCTCATGAAGTTGAAAATGCAACATGGATGCCAACTGTTTTCAAATTCTTTGGAAGACATTTCTGCTTGCACTTTGAGGCTTTTCAGATTGGTACAGCTCCTGTTTATATGGCTTTTTTACGATTCATGGGTGATGATGACGAGGCAAAGAGATTCAGCTATAGCTTGGAAGTCGGTGCTAATGGCCGCAGGCAGATATGGCAAGGGATTCCAAGGAGCATTCGGGACAGTCATAGGAAAGTTCGTGACAGTCAAGACGGACTTGTTATTCAGAGGAAGCTAGCTCTTTTTTTTTCTGGTGGGGGTGGACCGGAGTTAAAGTTGAGGATTACTGGGCGTATATGGAAAGAAGATTGA 927 0.4261 MAPGVNACKEFQPHPTISDYDVAKSKHNAKSSSPLTKYNADFGGKHGGNSKNGVHDLLECPSCKNLMYPPIYQCPNGHTLCANCKTTVHNRCPTCHFDLGNIRCLALEKLAKSLELPCRYQSLGCHDIFACYTKLKHEQNCRFRPYNCPYAGSECSVMGNIPTLVSHLKDDHKVDMHDGCTFNHRYVKSNPHEVENATWMPTVFKFFGRHFCLHFEAFQIGTAPVYMAFLRFMGDDDEAKRFSYSLEVGANGRRQIWQGIPRSIRDSHRKVRDSQDGLVIQRKLALFFSGGGGPELKLRITGRIWKED 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1222 308 SUPERFAMILY RING/U-box 54 100 - -
Acco02g1222 308 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 46 148 IPR013083 -
Acco02g1222 308 Pfam Seven in absentia protein family 102 301 IPR018121 GO:0005737|GO:0006511|GO:0007275
Acco02g1222 308 ProSiteProfiles Zinc finger SIAH-type profile. 113 173 IPR013010 GO:0008270
Acco02g1222 308 CDD RING-HC_SIAHs 58 96 - -
Acco02g1222 308 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 171 301 IPR008974 GO:0005515
Acco02g1222 308 Gene3D Classic Zinc Finger 149 170 - -
Acco02g1222 308 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 37 307 - -
Acco02g1222 308 SUPERFAMILY TRAF domain-like 113 304 - -
Acco02g1222 308 FunFam E3 ubiquitin-protein ligase SINAT3 110 168 - -
Acco02g1222 308 FunFam E3 ubiquitin-protein ligase SINAT5-like 169 301 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1222 Acco-ChrAcco02 9014293 9016364 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1222 1 308 C3H Transcription Factor Family AT2G41980 72.168 2.77e-167 465