Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1217 ATGGAGTTGGCCTTGAGCTTAGGGGACACACCCAAGCCCTTCTCTTTTCTTGACAAGCTCACCAGCATGCCCCGCCAGGACCCTGCCTTCTGCATGCCACTCGCCGCCGCCCCTTTCTCTCCCAAAACATGTAATCAATATACAGAAGCCCATGAAGATGGTCGCACTTCATCTGCTCCGCCTCTTCCCCTCACCCCGCTTCCTCCAAACCCTCCACCACGCCTTTCTATTCCTTGGCTCTCCCGTCCCTTAGGCCGTGAAGAGATTTCATCTGATAGAGCAGCGACTGCGAGGGGATTGGATGTGAACAGTTCTCCCGCAGAAGTAGATGAGGCCGACGACGCCGCTGCACTCTCATCTCCCAACAGTGAGATCTCTTCATTTCACTTGGATTTCCGCCTCAGAAATGGTCACGGCTCCGGCACTTACAAGAGAGAGCACGAGGCTAACGCCGACAGACCCAGCGACGATGACGAAAACGGATCAAATCGCAAGAAACTCCGACTATCTAAGGAACAGTCTGCCTTCCTGGAAGAGAACTTTAAAGAACACGCCACCCTCAATCCCAAGCAGAAACTTGCCCTGGCGAAGCAATTAAACCTTCGTCCTCGTCAAGTGGAAGTTTGGTTCCAAAATAGACGGGCTAGGACGAAATTGAAGCAGACGGAAGTAGACTGTGAGTATTTGAAGAGATGCTGCGAGACGCTGACGGAGGAGAATAGGAGGCTACGGAAGGAGGTGCAGGAATTAAGGGCTTTAAAGACATCGCAGCCGTATTACATGCAGCTTCCGGCCACTACTCTCACCATGTGTCCCTCCTGTGAAAGGGTCGTTACCAAATCTTCAGCCGCCGGCACCACATCCACCGCGGGGGCAACTGCCACTAGTACAAGCAGTGCTTCTCGAATCCCAGTAGCTTTGTCTCTCGGAAAGCCTGGAATGCTTCCCTTCCCCAACGGGCAGGCCCAGGCCCATCATACGGCTTCTTGA 990 0.5364 MELALSLGDTPKPFSFLDKLTSMPRQDPAFCMPLAAAPFSPKTCNQYTEAHEDGRTSSAPPLPLTPLPPNPPPRLSIPWLSRPLGREEISSDRAATARGLDVNSSPAEVDEADDAAALSSPNSEISSFHLDFRLRNGHGSGTYKREHEANADRPSDDDENGSNRKKLRLSKEQSAFLEENFKEHATLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLRKEVQELRALKTSQPYYMQLPATTLTMCPSCERVVTKSSAAGTTSTAGATATSTSSASRIPVALSLGKPGMLPFPNGQAQAHHTAS 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1217 329 SMART HOX_1 162 224 IPR001356 GO:0003677
Acco02g1217 329 Coils Coil 226 256 - -
Acco02g1217 329 Gene3D - 168 218 - -
Acco02g1217 329 SUPERFAMILY Homeodomain-like 154 221 IPR009057 -
Acco02g1217 329 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 97 298 - -
Acco02g1217 329 ProSiteProfiles 'Homeobox' domain profile. 160 220 IPR001356 GO:0003677
Acco02g1217 329 FunFam Homeobox-leucine zipper protein HAT22 168 214 - -
Acco02g1217 329 ProSitePatterns 'Homeobox' domain signature. 195 218 IPR017970 GO:0000981|GO:0006355
Acco02g1217 329 MobiDBLite consensus disorder prediction 45 122 - -
Acco02g1217 329 Pfam Homeodomain 164 218 IPR001356 GO:0003677
Acco02g1217 329 Pfam HD-ZIP protein N terminus 86 128 IPR006712 GO:0005634
Acco02g1217 329 CDD homeodomain 164 221 IPR001356 GO:0003677
Acco02g1217 329 Pfam Homeobox associated leucine zipper 220 254 IPR003106 GO:0006355|GO:0043565
Acco02g1217 329 SMART halz 220 263 IPR003106 GO:0006355|GO:0043565
Acco02g1217 329 MobiDBLite consensus disorder prediction 139 165 - -
Acco02g1217 329 MobiDBLite consensus disorder prediction 61 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1217 Acco-ChrAcco02 8982334 8983677 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1217 70 276 Homeobox Transcription Factor Family AT3G60390 56.637 3.01e-71 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Acco02g1217 Homeodomain 5.8e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1217 02 8982334 8983677 Acco06g1062 06 7182481 7183779 CCT
Acco02g1217 02 8982334 8983677 Acco02g1217 02 8982334 8983677 ECH