Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1216 ATGGGGGAAGAGACATCGGACGCAATGAACCTTGATTTGAATCTGGGTCCTGATCCAGAGCCAGCAGCTGGCTCCATAGCCAATGAATCCGTGAGCATAGACGATTGGATCGAAGAACCTAGGGTCACCGAAGCAGTTAGACATAGGGCTCGACAGAGGTGGAGATGGCGGCATCTTCACATTAATCATCCTGAACCCCATCGTAGTCTTTTTATTTCACCTGAGGTACATAGGGGTTTTATAATGGCGCCTGAAGCCCAACATATTTCAATGCGATTGAATCATTTGTTGGCCAGCCCTGGTAATGGAAGTGCGTTGCAGGCTGGGGAAGGCAGCGTGGCAGCTGAAGAAAGAACAGAGGTGACACCCAAAGCATGTGAAACAAACAATGGTGTTACGGAGGATGAAGCATCAGATAAAAAGGATGATGTTGAAAAGGGTAGTGGCAATGATGGGAGCTTTTTTGATTGTAATATCTGTTTGGACCTGGCTAGAGATCCTGTTGTGACTTGCTGTGGTCATTTGTTTTGTTGGCCATGCCTCTATCGGTGGCTACATGTCCATTCAGAAGCTAAGGAATGTCCAGTTTGCAAGGGAGAGGTAACAATTAAAAATGTTACACCAATTTATGGTCGTGGAAATAATGTCCATGAACCTGAGGAAGATCCTACTCTTGAAGTCCCTCTTAGACCCCATGCTAGGCGTGTTGAAAGTCTGAGACAAACCATTCATCGAAATGCCTTGGCATTCCCAGTGGAAGAGATGATTCGGCGTCTTGGAAGTAGATTCGATCTCTCTCGAGATGTAGGCCAGCCAAATGAGCCTGACAATGCCCAGGAAGCAGCTGACAGAACTACTTTGCTAAATAGATTTTTGACCTCTCGAGGTTTACGGAGAGAGCATATTCATGGGGCAGCCGCAGATGATGTAGTGGACTTAATTCAAAACAACATTAGTGGTCCTGAGGTAGGGGATAACCGCAGGGTTCAGTCTCTTTTACTTCGAAGATCACAGTCACATAGAACATCACTTTCTTCTCTTTCATCAGCTCCGAGTTCCGCAGAGAGATATGTTGAGGCATATATCCATCGCAATTCTATTGGCAGAAACCAAGAGCATCCTCCCCCTGTTGATGACAGAGACTCCTTTTCAAGTGTTGCTGCTGTTATACACTCAGAGAGTCAAGTAGACACTGCTGTAGAAATTGACTCCATGGTTTCTTTGTCAACATCCTCTTCCAGGAGGAGAAATGACGCATCTCGGGTTTCTGATGTGGATAGTGGGGATTCTCGGGCTCCCAGGCGAAGACGTTTGAACTGA 1320 0.4629 MGEETSDAMNLDLNLGPDPEPAAGSIANESVSIDDWIEEPRVTEAVRHRARQRWRWRHLHINHPEPHRSLFISPEVHRGFIMAPEAQHISMRLNHLLASPGNGSALQAGEGSVAAEERTEVTPKACETNNGVTEDEASDKKDDVEKGSGNDGSFFDCNICLDLARDPVVTCCGHLFCWPCLYRWLHVHSEAKECPVCKGEVTIKNVTPIYGRGNNVHEPEEDPTLEVPLRPHARRVESLRQTIHRNALAFPVEEMIRRLGSRFDLSRDVGQPNEPDNAQEAADRTTLLNRFLTSRGLRREHIHGAAADDVVDLIQNNISGPEVGDNRRVQSLLLRRSQSHRTSLSSLSSAPSSAERYVEAYIHRNSIGRNQEHPPPVDDRDSFSSVAAVIHSESQVDTAVEIDSMVSLSTSSSRRRNDASRVSDVDSGDSRAPRRRRLN 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1216 439 MobiDBLite consensus disorder prediction 1 20 - -
Acco02g1216 439 Pfam Zinc finger, C3HC4 type (RING finger) 157 197 - -
Acco02g1216 439 SUPERFAMILY RING/U-box 153 211 - -
Acco02g1216 439 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 222 IPR013083 -
Acco02g1216 439 MobiDBLite consensus disorder prediction 133 147 - -
Acco02g1216 439 FunFam E3 ubiquitin-protein ligase RMA3 125 246 - -
Acco02g1216 439 MobiDBLite consensus disorder prediction 417 439 - -
Acco02g1216 439 CDD RING-HC_AtRMA-like 155 198 - -
Acco02g1216 439 ProSitePatterns Zinc finger RING-type signature. 172 181 IPR017907 -
Acco02g1216 439 MobiDBLite consensus disorder prediction 407 439 - -
Acco02g1216 439 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 127 326 IPR045103 GO:0005783|GO:0006511|GO:0061630
Acco02g1216 439 MobiDBLite consensus disorder prediction 107 147 - -
Acco02g1216 439 SMART ring_2 157 197 IPR001841 -
Acco02g1216 439 ProSiteProfiles Zinc finger RING-type profile. 157 198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1216 Acco-ChrAcco02 8960903 8962222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1216 1 430 C3H Transcription Factor Family AT3G58030 51.327 3.67e-128 376
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1216 02 8960903 8962222 Acco02g1216 02 8960903 8962222 ECH