Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1202 ATGGATGTTCGTAAGAGAGGTAGGCCCGACGCTGGCATCAAAGTTAACGGTGGCTTCAAGAAGACCAAGCAAGAATTGGAGTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCTTGTACCAAGTTTTTCAGCACTGCTGGCTGCCCTTTTGGCGAGGGTTGCCACTTCTTGCACTATGTTCCTGGTGGTTATAATGCTGTTGCCCAGATGATGAATTTAGCCCCTGTTACTCATACTGCTTCTAGAAATGTTGTAGCCCCACCACCGGTTCATAATCATAATCATAATGGCTCCGCTCCTGCTGTCAAATCTCGCATATGCAATAAATATAATTCTGCCGAAGGCTGCAAATTTGGTGACAAGTGTCATTTTGCACACGGTGAATGGGAACTTGGCAAGCCTATTGCTGCTTCAGCAGAAGATCATCATGCTGTGGGACCTATTGCAGGCCGTATTGCTCCCAACCGAATGGAGCCCCCACCTGGTCCTGTGGCAAGTTTTGGTGCCAGTGCCAATGCCAAGATTAGTGTAGAAGCATCCTTAGCTGGAGCAATCATTGGGAAGGGTGGCGTAAATTCGAAGCAGATCTGTCGCCAAACAGGGGCCAAACTATCAATTCGGGATCATGAGTCAGATCCAAATCTTAGAAACATTGAGCTTGAGGGAAGCTTTGAACAAATCCAGGAAGCTAGTTACATGGTGAGAGAGTTACTCGCAACCATCTCAATGTCCGCACCACCTAAAATCCCTAGTGTTGCTGGTGGCCCAGCCCCACGTGGAAGCAATTATAAGACCAAGCTGTGTGAGAATTTTGCCAAAGGATCTTGCACTTTCGGAGAACGATGTCACTTTGCACATGGGGCTGCTGAACTGCGTAAAACAATAGTATGA 894 0.4732 MDVRKRGRPDAGIKVNGGFKKTKQELESLSTGVGSKSKPCTKFFSTAGCPFGEGCHFLHYVPGGYNAVAQMMNLAPVTHTASRNVVAPPPVHNHNHNGSAPAVKSRICNKYNSAEGCKFGDKCHFAHGEWELGKPIAASAEDHHAVGPIAGRIAPNRMEPPPGPVASFGASANAKISVEASLAGAIIGKGGVNSKQICRQTGAKLSIRDHESDPNLRNIELEGSFEQIQEASYMVRELLATISMSAPPKIPSVAGGPAPRGSNYKTKLCENFAKGSCTFGERCHFAHGAAELRKTIV 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1202 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 104 129 IPR000571 GO:0046872
Acco02g1202 297 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 264 288 IPR000571 GO:0046872
Acco02g1202 297 SMART kh_6 170 240 IPR004087 GO:0003676
Acco02g1202 297 Pfam KH domain 175 237 IPR004088 GO:0003723
Acco02g1202 297 SUPERFAMILY CCCH zinc finger 102 133 IPR036855 GO:0046872
Acco02g1202 297 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 161 241 IPR036612 GO:0003723
Acco02g1202 297 PANTHER CCCH ZINC FINGER/TIS11-RELATED 23 139 IPR045877 GO:0003729
Acco02g1202 297 Gene3D K Homology domain, type 1 168 263 IPR036612 GO:0003723
Acco02g1202 297 ProSiteProfiles Type-1 KH domain profile. 171 235 - -
Acco02g1202 297 ProSiteProfiles Zinc finger C3H1-type profile. 102 130 IPR000571 GO:0046872
Acco02g1202 297 ProSiteProfiles Zinc finger C3H1-type profile. 263 290 IPR000571 GO:0046872
Acco02g1202 297 FunFam Zinc finger CCCH domain-containing protein 97 134 - -
Acco02g1202 297 ProSiteProfiles Zinc finger C3H1-type profile. 34 62 IPR000571 GO:0046872
Acco02g1202 297 SUPERFAMILY CCCH zinc finger 262 294 IPR036855 GO:0046872
Acco02g1202 297 SMART c3hfinal6 104 129 IPR000571 GO:0046872
Acco02g1202 297 SMART c3hfinal6 263 289 IPR000571 GO:0046872
Acco02g1202 297 SMART c3hfinal6 34 61 IPR000571 GO:0046872
Acco02g1202 297 FunFam Zinc finger CCCH domain-containing protein 258 294 - -
Acco02g1202 297 CDD KH-I_AtC3H36_like 174 239 - -
Acco02g1202 297 Pfam RNA-binding, Nab2-type zinc finger 39 59 - -
Acco02g1202 297 Gene3D - 264 295 - -
Acco02g1202 297 Gene3D - 95 134 - -
Acco02g1202 297 SUPERFAMILY CCCH zinc finger 35 60 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1202 Acco-ChrAcco02 8824130 8828993 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco02g1202 KH_1 2.1e-12 CL0007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1202 02 8824130 8828993 Acco06g1077 06 7297544 7310907 CCT