Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1196 ATGGACGATTTCAAAAAGAGAAAGCTAGAAGAGGCCGGCAACGACGATGCTTCTACGAAGGAAGAGCTTCGCTTTCTCCTGGACCCGCTGGCCAAACCCCAACTTGTTGATCTCCTCGCTAAACTAGGGTCCCAATATCCTTCAATTGCAGAAGAAATAAAAAGTATTGCAAGTGCAGATCCTGTCCATCGAAAGCTTTTTGTTCGTGGCTTGGCCTGGAATACCTCTTCAGAAACCTTGTGTGCTGCATTTCAAGAACATGGAGAAATTGAGGAAGGAGCTGTTATCTATGATAAAGCAACAGGAAAATCCCGTGGTTATGGCTTCATCACTTTCAAAGATATGGAATCAACTCATTGTGCATTAAGAGCACCGAGCAAGTTAATTGATGGCAGGTTGGCTGTCTGTAATTTAGCTTGTGAGGGCCTAAGCGGTGCAAGTAATGCCCCTGATCTTTCGCTGAGGAAGCTGTACATTGGAAGCTTATCACCAGAAGTCAGTAGTGAAATGTTGCTTAACTTTTTTGGGAGGTATGGTGAAATAGAGGAAGGGTCAGTTGCATATGACAAGGATACAAATGAATCTCGTGGTTTTGGCTTTGTCACATACAAGACTGCAGAAGCTGCGAAGAAGGCAATCGATGATCCAGAAAAGACTCTTGGGGGGAGAAATATAATGGTAAAATTTGCGGATTTCCACAAGGGGAAAACAGGGCAGCCGTCAATGGTTCCAATGACAGCCTTACCAATGGCTCCTGGATATATGCAGATGCAGCATGTCAAAACACATATTACCACCCCCCAAGTTGGCTACAATTACCCTCAGACCGTAGCATCATACCCTGCACCTTCTTATCCGAGTCCTCCCACTGCAGCCACATCTTATTCTTCAGTTTCTGGGAAGTCAACTGCGCCTGTTGGAATGAACAACTACCCATATTACTATCCTAAGCAATAA 957 0.4462 MDDFKKRKLEEAGNDDASTKEELRFLLDPLAKPQLVDLLAKLGSQYPSIAEEIKSIASADPVHRKLFVRGLAWNTSSETLCAAFQEHGEIEEGAVIYDKATGKSRGYGFITFKDMESTHCALRAPSKLIDGRLAVCNLACEGLSGASNAPDLSLRKLYIGSLSPEVSSEMLLNFFGRYGEIEEGSVAYDKDTNESRGFGFVTYKTAEAAKKAIDDPEKTLGGRNIMVKFADFHKGKTGQPSMVPMTALPMAPGYMQMQHVKTHITTPQVGYNYPQTVASYPAPSYPSPPTAATSYSSVSGKSTAPVGMNNYPYYYPKQ 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1196 318 SUPERFAMILY RNA-binding domain, RBD 149 231 IPR035979 GO:0003676
Acco02g1196 318 SMART rrm1_1 156 228 IPR000504 GO:0003723
Acco02g1196 318 SMART rrm1_1 65 137 IPR000504 GO:0003723
Acco02g1196 318 MobiDBLite consensus disorder prediction 289 306 - -
Acco02g1196 318 CDD RRM2_NsCP33_like 156 230 - -
Acco02g1196 318 PANTHER GEO13361P1-RELATED 47 144 - -
Acco02g1196 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 155 232 IPR000504 GO:0003723
Acco02g1196 318 Gene3D - 145 245 IPR012677 -
Acco02g1196 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 132 IPR000504 GO:0003723
Acco02g1196 318 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 157 225 IPR000504 GO:0003723
Acco02g1196 318 Gene3D - 44 144 IPR012677 -
Acco02g1196 318 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 132 IPR000504 GO:0003723
Acco02g1196 318 MobiDBLite consensus disorder prediction 284 306 - -
Acco02g1196 318 SUPERFAMILY RNA-binding domain, RBD 59 140 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1196 Acco-ChrAcco02 8765063 8768467 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1196 151 285 C2H2 Transcription Factor Family AT2G19380 28.758 9.59e-14 70.1