Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1177 ATGGATTCCAATACCTTTCTCAATTATCAACACCAACATCAGCCCAATTCCGGGTTGCTTCGGTTTCGCTCTGCCCCGACTTCGGTTCTTGCAAATTTCACTCAATCCCTTGCCTCGGATCTCAGTAAGGGAAATAATCCGTGGGAAAATTCTGAATCCGAGAAATTAATCTCTAGATACGTAAATAACGACTACCTGGATTCGTCTGGTTTCCAGGAATTCGAAGCCAAGCCCCCTAAAGCACAGACCGAAGCAGCACTCAACCATATGAACTCCTATAATAATGGTTTGCCCCCTCACTACCCAAGGCGAAATTCCACGGCAAGTTCTGCAATGGATAGTTCCTATGGACTGGTGGAATCGTTGGAAATGGATCCTCAAACGCAGCCCAAGAGCTTCACTACGAATCTTCTCAGGCAAAGCAGCTCCCCTGCCGGGCTTTTCTCCAACAGTTCCTTTCCAAACGGGTATTCCACCGTTAAGGGTGTTAGAAACTATGGTGGGGCGAATTGCAGTAATGGTGAAGGTAGTCCATCCATGAGCAGATTGAAGAATCAGCTTGGTTTCTTATCAAGTAGTTCTTCCTTGGGAATGTTGTCACAGATATCTGAGATAGAGGGTGAGAGTATTGAAGCAACCAACCCTGACAATGGGGGCTTGGGGTCTGTGAATGGTTATGCACCAGGTTTTCCATACAGTTCCTGGAATGACGCGTCCCATCTCCCAGAAAATCTCGGTGGCTTGAAAAGAGAGCCAAGTAACAGTAAAAATTTATTTTCTAATGCTCAGAATGGACCGCTTGGAAATCGGGTTCACATGTTATCTCATCACTTGAGTTTGCCAAAGCCTTCGGTTGATATGGGTGTCATGGACAAGTTTCTTCAATTCCCAGATTCGGTTCCTTGTAAGATAAGAGCAAAGCGAGGCTGTGCTACCCATCCTCGGAGTATTGCAGAAAGGGTAAGAAGAACTCGGATCAGCGAACGAATGAGAAAAATTCAAGAGCTGGTCCCAAACATGGACAAGCAAACAAACACAGCAGACATGCTGGACTTGGCCGTTGAGTACATCAAAGATCTCCAAAAACAGTTCAAGACTCTCAATGAAAAAAAGGCAAACTGCAAATGTATGAGCACGCAGAAGGCAGACGCAAATCATGCGGTTTGA 1167 0.4559 MDSNTFLNYQHQHQPNSGLLRFRSAPTSVLANFTQSLASDLSKGNNPWENSESEKLISRYVNNDYLDSSGFQEFEAKPPKAQTEAALNHMNSYNNGLPPHYPRRNSTASSAMDSSYGLVESLEMDPQTQPKSFTTNLLRQSSSPAGLFSNSSFPNGYSTVKGVRNYGGANCSNGEGSPSMSRLKNQLGFLSSSSSLGMLSQISEIEGESIEATNPDNGGLGSVNGYAPGFPYSSWNDASHLPENLGGLKREPSNSKNLFSNAQNGPLGNRVHMLSHHLSLPKPSVDMGVMDKFLQFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKIQELVPNMDKQTNTADMLDLAVEYIKDLQKQFKTLNEKKANCKCMSTQKADANHAV 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1177 388 Coils Coil 350 377 - -
Acco02g1177 388 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 313 377 IPR036638 GO:0046983
Acco02g1177 388 SMART finulus 316 366 IPR011598 GO:0046983
Acco02g1177 388 Pfam Helix-loop-helix DNA-binding domain 315 361 IPR011598 GO:0046983
Acco02g1177 388 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 310 360 IPR011598 GO:0046983
Acco02g1177 388 FunFam Transcription factor bHLH130 family 311 380 - -
Acco02g1177 388 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 28 378 - -
Acco02g1177 388 Gene3D - 311 385 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1177 Acco-ChrAcco02 8655587 8657713 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1177 1 366 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.052 1.04e-94 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco02g1177 HLH 3.2e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1177 02 8655587 8657713 Acco02g1177 02 8655587 8657713 ECH