Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1172 ATGGAGCAAACTCCAGGAGGTTTCACTGGATTTCGTCTCACTGCCGGTGAATGCGATCAGGCCACCCTTGAATCCATTCAATTCAACGAGGAAATCGAGCGAATCATAGCCCCAGCCCCAGAAAATGTCAGCTCCTTCACTGCACTTCTCGAATTACCCCCTGCGCAAGCCAAGGAAATCCTCCACTCGCCCAACTGTGACGGAGCCGCCGCCGCCGCCGCCGCGGTGGTCCCCGCCTACGGTGAACAATCCTTCTGCCATATCAACGATCAGAGACCCCACATATTTCACTCTTTCAGTGGCACTTTAACACTCCCTTCTAACACTGCTTTGATCGAACGCGCTGCCAAATTTTCAGTGTTTGCCGAAGAGAAATCGTCGCCGGAGGAACCTAACTTGGCTCCACTTAGTTCAAGAGCAAATTTGAACAGAGTAAAGCATGAACCCCCGGAAACCGATCCAAATCCTAAGCCAACCTCTGTTATCGCTTCTAACCCCTCAATTGAGTACAAGAATGAGAGGGCCACAAAGAGGAAGGAACGAGAGAAGAAGGATAAAGAGTCCTCGAAGAAGAGTAAAATCCGCGCCGACGAAACATCCGGAGGCGGAGATAAACTTCCATACGTCCATGTTCGAGCTCGTCGAGGGCAAGCTACAGACAGCCATAGCTTAGCAGAAAGGGCCAGGAGAGAGAAAATCAACGCTCGCATGAAGCTTTTACAAGAGCTGGTCCCCGGCTGCAATAAGATTTCAGGAATGGCATTAGTTCTGGATGAAACCATCAATCATGTTCATTCTCTTCAACGCCAAGTGGAGTTCTTGTCAATGAGACTAGCAGCAGTTAACCCAAGAGTTGATTTCGACCTTGACAGCATATTGGTTACCGAAGGTGTATCTCGAGTGGACTGCAACTTTCCCAACATGGTTACGCCTCCAGTGTGGCAGGAAGTTGCAGCCAATGGAAACATGCAGCAATATCAACAACACTATGACTCGTTTGCAAATTCAGCATCTCTGCAGTCGAACTCGAATCATTTGAAGATGGAGCTGTGA 1053 0.4919 MEQTPGGFTGFRLTAGECDQATLESIQFNEEIERIIAPAPENVSSFTALLELPPAQAKEILHSPNCDGAAAAAAAVVPAYGEQSFCHINDQRPHIFHSFSGTLTLPSNTALIERAAKFSVFAEEKSSPEEPNLAPLSSRANLNRVKHEPPETDPNPKPTSVIASNPSIEYKNERATKRKEREKKDKESSKKSKIRADETSGGGDKLPYVHVRARRGQATDSHSLAERARREKINARMKLLQELVPGCNKISGMALVLDETINHVHSLQRQVEFLSMRLAAVNPRVDFDLDSILVTEGVSRVDCNFPNMVTPPVWQEVAANGNMQQYQQHYDSFANSASLQSNSNHLKMEL 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1172 350 Gene3D - 213 275 IPR036638 GO:0046983
Acco02g1172 350 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 217 267 IPR011598 GO:0046983
Acco02g1172 350 SMART finulus 223 273 IPR011598 GO:0046983
Acco02g1172 350 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 155 332 IPR024097 GO:0006355
Acco02g1172 350 Coils Coil 172 192 - -
Acco02g1172 350 MobiDBLite consensus disorder prediction 171 200 - -
Acco02g1172 350 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 215 285 IPR036638 GO:0046983
Acco02g1172 350 MobiDBLite consensus disorder prediction 123 206 - -
Acco02g1172 350 FunFam transcription factor bHLH48-like isoform X1 214 286 - -
Acco02g1172 350 CDD bHLH_AtBPE_like 207 292 - -
Acco02g1172 350 Pfam Helix-loop-helix DNA-binding domain 221 268 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1172 Acco-ChrAcco02 8583472 8588440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1172 6 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 54.194 8.83e-86 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Acco02g1172 HLH 1.4e-05 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1172 02 8583472 8588440 Acco02g1172 02 8583472 8588440 ECH