Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1170 ATGTTGAAGAATGGCCGATGGCGTAGATGGGTGGCCGGTATTTGGGACGCGAAGAAATATCACCTGGGCACATTCGAGACGGAGGAGGCGGCGGCGAGAGCATATGATATAGCGGCGATAAGATTGAGGGGCCCGACCGGCGCCAAAAAATTGAATTTCGACTTGAAAAATTATAATGTCAAAAAGATTTTTAAATATGGTAACATTCCACTCAAGGAACTCAAATGGGAACGGTTTTTTGAAAGTGAAGAGTTTGGAGTTCTACCAGATGGGTTTTTTGATGGCCTGAGATTTCCACCATATGGGTTTTTTGATGAAGAATCTGAATCTCGTCTACGAAATGGACATTACAATTACACTAGTGAACCTCTAATAAATGACTTGACGAACGAAAACGTAAAGGATTACAGCAATGAGATCTACTGGAGTTCGGATGACGACAAGCCTCAAGAACCTGCTGAGAGTCGAGCAGTTTCGTACGTGAAGATCAAGAATCCCCACAAGGTAATTAAAACATCATCGAAATATATGGAATCAAATAATTCATCATCCAACACCGCGACAGCTTCCTCTTCTGATCCGCCACCTCCTAATCAAAGGAATGATGACAAAGGAAAACAAACTTGCAGCAACGGGAGCGAAGCAAATAAGAACAAGAATAATAACCCGGAGAGCAGTGTTCTTAAAGCAGGAAACAAACGGAAATCCTCAAGTTATTATGATGGGTTTGTGTATATGGATGATAATGATGACCTGCAATCGCTACCAGATGGGTTTTTTGAAAATGGGTCTCCTTGGAATAATGATCAGTGTTACAGTGAACCTCTAATATTAATGGAGAATTTGGTGAGCGGAAATGATGATCCGTTGCATGATTTCAAAGGTCTTGATTCTACGGAGGACATCCAGATGAGTTTCGCTTACGACGAGGTGGAGCCTCCACAATCTTCTGGTGGGTCCTCCTCCCAACAGCTGTATCATGATTATCATCTGATCAAAGCAGGAAATCAGACGGTGGCGAATAGTGAGGGGTTATTTGGTTACAGTGAACCTCTAAAGAAAAAACCTCTAATAGTGTTCCAAAAAAAGAAAAAAAAAGGTCTTGATTCTACGGAGGACATCCAGATGAATTACGCTTACGACAAGGAGGAGCCTCCACAATCTTCTGGTGGGTCCTCCTCCCAACAGCTGTATCATGATTATCATCCGATCAAAGCAGCAAATCAGACGGTGGCGAATAGTGAGGGGTTATTTGGTTACAGTGAACCTCTGATGAAAAAAACTCTAATAGTGTTCCAAGAAAATAAAAAAAAGGAACCTGCTCTAATGGAGCATTTCGTGAGCGGAAATGATTCTTTGAATGGTTTTGAAGATATTAATTCCAAGGAGGATGTGGAGATGAATTTCGCTGACGAGGACCCAGCTGGTGGGTCCTCCCCCCAACAGCTGTATCATGATTATCATCCTTTTTAG 1473 0.4223 MLKNGRWRRWVAGIWDAKKYHLGTFETEEAAARAYDIAAIRLRGPTGAKKLNFDLKNYNVKKIFKYGNIPLKELKWERFFESEEFGVLPDGFFDGLRFPPYGFFDEESESRLRNGHYNYTSEPLINDLTNENVKDYSNEIYWSSDDDKPQEPAESRAVSYVKIKNPHKVIKTSSKYMESNNSSSNTATASSSDPPPPNQRNDDKGKQTCSNGSEANKNKNNNPESSVLKAGNKRKSSSYYDGFVYMDDNDDLQSLPDGFFENGSPWNNDQCYSEPLILMENLVSGNDDPLHDFKGLDSTEDIQMSFAYDEVEPPQSSGGSSSQQLYHDYHLIKAGNQTVANSEGLFGYSEPLKKKPLIVFQKKKKKGLDSTEDIQMNYAYDKEEPPQSSGGSSSQQLYHDYHPIKAANQTVANSEGLFGYSEPLMKKTLIVFQENKKKEPALMEHFVSGNDSLNGFEDINSKEDVEMNFADEDPAGGSSPQQLYHDYHPF 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1170 490 MobiDBLite consensus disorder prediction 469 490 - -
Acco02g1170 490 Pfam AP2 domain 5 44 IPR001471 GO:0003700|GO:0006355
Acco02g1170 490 Gene3D AP2/ERF domain 3 56 IPR036955 GO:0003700|GO:0006355
Acco02g1170 490 ProSiteProfiles AP2/ERF domain profile. 1 54 IPR001471 GO:0003700|GO:0006355
Acco02g1170 490 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 6 202 - -
Acco02g1170 490 MobiDBLite consensus disorder prediction 141 160 - -
Acco02g1170 490 SMART rav1_2 6 60 IPR001471 GO:0003700|GO:0006355
Acco02g1170 490 MobiDBLite consensus disorder prediction 171 233 - -
Acco02g1170 490 MobiDBLite consensus disorder prediction 172 233 - -
Acco02g1170 490 SUPERFAMILY DNA-binding domain 6 55 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1170 Acco-ChrAcco02 8571610 8576746 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1170 3 85 AP2-EREBP Transcription Factor Family AT3G20840 37.349 4.97e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco02g1170 AP2 2.1e-06 CL0081