Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1166 ATGGAGACCGATAATAGTGATGCCAAGTCAAATATGGAAGAGTATGAACTAATAGAGCAAATTGGCCGAGGAACACTGGGCACCTCCTTCCTCATTCTCCATAACTCTGAGAAAAAGAAGTATGTGCTCAAGAAGATTCGCTTGGCTAAGCAAATCGATAAGTCTAAACGTACAGCGCTTCAAGAGATGAACCTGATTTTACAGCTAAATAACCCATATATTATCGAGTACAAAGATGCTTGGATGGAAAAGGAGGACTGCTTATGTATTATAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGATAATAAAGAGAGCCCGGGGATCCTTTTTCTCTGAGGAGAAAATCTGCAAATGGATGACTCAATTATTGCTTGCTGTGGACTATCTGCATTCTAATCGTGTACTCCATGGAGATCTTAAGTGGTCCAACATATTCCTTTCCAAAGGCAATGACATTCGACTTGGTGACTTTGGTCTTGCAAAACTACTGAACACTGAAGGCCTTGCTTCCTCGGGTGCGGGAACTCTAAATCACATGTGTCCTGAGCTCCTTGAAAATATACCTTATGGTTATAAATCTGATATATGGTCTCTTGGTTGTTGCATGTTTGAAATTGCTGCACATCAACCTGCATTTCGTGCTCCTGACAAGGCCGGGCTTATCAATAAGATAAATAGATCCTCCATTTCTCCGCTGCCAATTGTTTATTCGTCAACACTGAAACAAATTATCAAGAGCATGCTGAGGAAGAATCCAGAACATAGACCAACAGCACTGGAATTGTTAAGGCATCCTCATTTACAACCATACGTCGTCCGCTGTCGTAATGCATCGGCTATCCTTCTTCCAATAAAATCTGTAAGTAGCCCAAATAATAAAACAAAAAGATCTTATAGGCCTGGTGATGGCAAAGACCATAGGGACAAAGAAGTAGAGGGATTAACTAATCGATTGGAAAGCGTTCATCTATTTGAGGCAAATGGTAATGTACATCCAAGCAGTGTTCCCAAGCAAACAGTGTCATCCAGTGTAGAAGACAACCTTGAGACCAAGATGGTTGATTCCACCAACTACATTGTGGAATCATGTTCTAGTATTAGTGGCTCAAAAGCTGGCTCTACGACATCTGAATCTACTGTTAGTAGTGTGTTCAAGGAAGTAGACTTTAAAATTAAAACTGCAAGTGAAACAGTTGATAATGAAGTTACATCAGAGACAATTCCAGAAGATTCTAAGCATGAAGAACTAGGAATGAATGCTGAACCTTTTCAAAAATCAGAAAGGGTTGACATGGATGCAGTGGCCACAAATGTAAAAGGTATGCTTTCCTATGATGGTTCCATTGAAGCCAAGCCACAGAGGGAAAGTACCATACCTGAGGACTCCAAGAAACCAATAACGCCCTGTGCAGGAAGCTGTGATGAAGATGGGTCTGTTGAGGGAACTTTAGAACCACCCACACCTATGCAATTGGCTAGGGATAGGGTCGAACAGGACACCGAACCTGGAAGCTGCTTAAAGAGAAGCCATGATACCATTGCATTTCCAGAAGGCCTTCCCCTGGATTGTTTGTCTTCCGAGAGTAATGATAAGCTTGCAGGTAAAGCTGGAGGAGGCCAAGCAAGAACACTTGACGCGACTTGTTCCATGTATAAAGAGAATGAAACTGTTGGTGCAGTTGATCAGATACCAAGTGGGCTTTCATCAAGCAAACCTACTGAGATAGGTGGCGATGAAACCAAAAATGTGCCGGAGAGACCAGGCGAGCAAAGAGCTGGTGCTCTGGAGTCTCTGCTTGAGTTATGTGCTCAGTTACTTAAGCAGGACAAACTTGATGAACTTGCTCGTGTGCTTGGACCATTTGGCCGTGAAGCTGTCTCATCCAGAGAGACTGCAATATGGTTGACAAAGAGCCTCATATCTGCACAAAAAAACTTTAACACGGATACCTAG 1959 0.4262 METDNSDAKSNMEEYELIEQIGRGTLGTSFLILHNSEKKKYVLKKIRLAKQIDKSKRTALQEMNLILQLNNPYIIEYKDAWMEKEDCLCIITGYCEGGDMAEIIKRARGSFFSEEKICKWMTQLLLAVDYLHSNRVLHGDLKWSNIFLSKGNDIRLGDFGLAKLLNTEGLASSGAGTLNHMCPELLENIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDKAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTALELLRHPHLQPYVVRCRNASAILLPIKSVSSPNNKTKRSYRPGDGKDHRDKEVEGLTNRLESVHLFEANGNVHPSSVPKQTVSSSVEDNLETKMVDSTNYIVESCSSISGSKAGSTTSESTVSSVFKEVDFKIKTASETVDNEVTSETIPEDSKHEELGMNAEPFQKSERVDMDAVATNVKGMLSYDGSIEAKPQRESTIPEDSKKPITPCAGSCDEDGSVEGTLEPPTPMQLARDRVEQDTEPGSCLKRSHDTIAFPEGLPLDCLSSESNDKLAGKAGGGQARTLDATCSMYKENETVGAVDQIPSGLSSSKPTEIGGDETKNVPERPGEQRAGALESLLELCAQLLKQDKLDELARVLGPFGREAVSSRETAIWLTKSLISAQKNFNTDT 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1166 652 MobiDBLite consensus disorder prediction 453 474 - -
Acco02g1166 652 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 526 - -
Acco02g1166 652 MobiDBLite consensus disorder prediction 292 312 - -
Acco02g1166 652 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Acco02g1166 652 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g1166 652 SUPERFAMILY Protein kinase-like (PK-like) 12 300 IPR011009 -
Acco02g1166 652 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g1166 652 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Acco02g1166 652 Gene3D Transferase(Phosphotransferase) domain 1 95 282 - -
Acco02g1166 652 CDD STKc_Nek 15 269 - -
Acco02g1166 652 MobiDBLite consensus disorder prediction 564 578 - -
Acco02g1166 652 MobiDBLite consensus disorder prediction 564 588 - -
Acco02g1166 652 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1166 Acco-ChrAcco02 8538601 8543566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1166 21 300 MAP Kinase Kinase Kinase AT1G53570 31.930 9.65e-34 134
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Acco02g1166 Pkinase 4.1e-62 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1166 02 8538601 8543566 Acco06g1114 06 7609180 7613749 CCT
Acco02g1166 02 8538601 8543566 Acco02g1166 02 8538601 8543566 ECH