Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1163 ATGGCTGACCCTTACTCTCATCTTTTCCCTTCTCCTCCTTTCTTTCACCAATTCAACTCTAACCCTTCTTCTTACCACCACCATCCTTATGCTCTCCACAACTTCATCAACCACCCCACGTCCTCCTCCTCCGGCAGCTTTTTCCACCACCACCACGCCGTAGCTTCTTATTCTTCTATACCTTCATCACCGCCGTCTCCTCCTCTCAGAGAAGCCCTTCCTCTTCTGAGCCTCAGCCCCTCCACCAGGCAAGAGCATCAGGATTCTAATCATAATCAGGACTTGGATGATGTTAAGATCGACGGTGGCAGCACGATCATCCTCCACGGTGCTAAACCCAAAGAGGAAGAAGAGGAGGTGGAGGAGGAGGAGGAGGCCACCGTCACTGTTGCACTCCACATAGGGCTGCCCAGCCCTAGTGCTGCTGAGATGGCTTCTGTCCTCTCCTCTTGCAACCATAAAGAAGGAGGAGATGGCGGCGGCAGTGGAGGAGGAGGCGGCGGAGACGGAGATCATGACGATTATTGTTCTGGCTCCAGCGGGTTCATGCTGCACAATAAGCTCAACAAGGGACAGTACTGGATCCCTACTCCTTCGCAGATTCTCATTGGTCCAACCCAGTTCTCTTGCCCTGTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCACATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCAGAATCACTGCGAGGAACACAACCAACGGGAATGCTTAGGCTTCCATGTTATTGTTGTGCACCAGGTTGCAGAAACAACATAGACCATCCAAGAGCGAAGCCACTGAAGGATTTTAGAACACTTCAAACGCATTACAAGAGGAAGCACGGGATCAAGCCCTTCATGTGCAGAAAATGTGGCAAGGCTTTTGCTGTGAGAGGAGATTGGAGAACTCACGAGAAAAATTGTGGCAAGCTCTGGTATTGTATCTGTGGCTCTGATTTTAAACACAAGAGATCTCTTAAGGATCATATCAAAGCCTTTGGAGCTGGCCATGCTGCTTATGGGATCGATGGCTTTGAAGAAGAAGATGACCCTGCCTCCGAAGTCGAGCAAGATAACGATTCCACCCAGTAA 1110 0.5009 MADPYSHLFPSPPFFHQFNSNPSSYHHHPYALHNFINHPTSSSSGSFFHHHHAVASYSSIPSSPPSPPLREALPLLSLSPSTRQEHQDSNHNQDLDDVKIDGGSTIILHGAKPKEEEEEVEEEEEATVTVALHIGLPSPSAAEMASVLSSCNHKEGGDGGGSGGGGGGDGDHDDYCSGSSGFMLHNKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGAGHAAYGIDGFEEEDDPASEVEQDNDSTQ 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1163 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 208 235 IPR013087 -
Acco02g1163 369 Gene3D Classic Zinc Finger 270 345 - -
Acco02g1163 369 Gene3D Classic Zinc Finger 207 230 - -
Acco02g1163 369 FunFam Zinc finger protein WIP2 261 343 - -
Acco02g1163 369 MobiDBLite consensus disorder prediction 150 172 - -
Acco02g1163 369 PANTHER ZINC FINGER PROTEIN WIP2 37 365 IPR043584 GO:0003700|GO:0010468
Acco02g1163 369 SMART c2h2final6 208 230 IPR013087 -
Acco02g1163 369 SMART c2h2final6 292 312 IPR013087 -
Acco02g1163 369 FunFam zinc finger protein WIP2-like 207 230 - -
Acco02g1163 369 ProSiteProfiles Zinc finger C2H2 type domain profile. 292 312 IPR013087 -
Acco02g1163 369 MobiDBLite consensus disorder prediction 80 99 - -
Acco02g1163 369 ProSitePatterns Zinc finger C2H2 type domain signature. 210 230 IPR013087 -
Acco02g1163 369 SUPERFAMILY beta-beta-alpha zinc fingers 274 312 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1163 Acco-ChrAcco02 8511632 8513926 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1163 1 366 C2H2 Transcription Factor Family AT3G57670 63.731 2.92e-151 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Acco02g1163 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1163 02 8511632 8513926 Acco06g1116 06 7636365 7638574 CCT
Acco02g1163 02 8511632 8513926 Acco02g1163 02 8511632 8513926 ECH