Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1158 ATGGATTCTAGCAGAAAATCTCCATTAAAGCCATGGAAGAAAGGGCCAAGCAGGGGGAAAGGTGGCCCTCAGAATGCAATGTGTGAGTACCGGGGCGTTCGCCAGAGAACGTGGGGAAAATGGGTTGCTGAGATCAGAGAGCCGAAGAAGAGAACTAGGCTGTGGCTTGGTTCTTTTACCACAGCTGAAGAAGCTGCCATGGCTTATGACGAAGCTGCAAGGAGACTATATGGTCCAGATGCTTACCTTAATCTTCCCCACCTTCAACCCACCTCCAGCTCCACCATCAAATCTCAAAAGTTCAAATGGTTTCCTTCCAAGAATTTCATTTCGATGTTCCCTTCTTGTGGATTGCTCAACGTGAATGCTCAGCCTAGTGTTCATGTAATCCACCAGAAGCTACAACAACTCAAGCAGAATGAGGTTCCCAATCACACTCCCGCCAGCTCATCCTGTGATCCAAAGGTTGAAGTTCAGACTATAGGAAGCAAGCATAATGGCTACAATCCTCTCAATGAAAAAGAAGCTAAAACATCATCCGAAAGTATGCTTGGTGTTATTCAGGACAAACCCCAGATTGACCTCCATGAGTTTCTTCAGCAGATGGGGGTACTAAAGGATGAAAAGCAGTCAGGAAGTTCCACAAAGTCTGAAGCTTTATCAAATGATTTCACCGATAATTTTGGGGAGTGTTCTGACAAGAGTGTTAACTGGGAGGAATTAATGGAGATGCATGCAGATGCAGATAATCAGGGATCAGAGGCAACTCAATTTCAAGCATATGACATAAACGAAGAGCTTACTTTCACCACTTCGATTTGGAACTTCTAA 831 0.4465 MDSSRKSPLKPWKKGPSRGKGGPQNAMCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFTTAEEAAMAYDEAARRLYGPDAYLNLPHLQPTSSSTIKSQKFKWFPSKNFISMFPSCGLLNVNAQPSVHVIHQKLQQLKQNEVPNHTPASSSCDPKVEVQTIGSKHNGYNPLNEKEAKTSSESMLGVIQDKPQIDLHEFLQQMGVLKDEKQSGSSTKSEALSNDFTDNFGECSDKSVNWEELMEMHADADNQGSEATQFQAYDINEELTFTTSIWNF 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1158 276 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Acco02g1158 276 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Acco02g1158 276 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Acco02g1158 276 MobiDBLite consensus disorder prediction 1 27 - -
Acco02g1158 276 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Acco02g1158 276 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Acco02g1158 276 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Acco02g1158 276 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Acco02g1158 276 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 242 - -
Acco02g1158 276 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Acco02g1158 276 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1158 Acco-ChrAcco02 8452754 8453584 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1158 5 276 AP2-EREBP Transcription Factor Family AT3G57600 52.330 1.28e-90 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Acco02g1158 AP2 8e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Acco02g1158 02 8452754 8453584 Acco06g1122 06 7683249 7684082 CCT
Acco02g1158 02 8452754 8453584 Acco02g1158 02 8452754 8453584 ECH