Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Acco02g1153 ATGGTTGGCATTAAATTATTACCCCAGTGTTTTGTCGTACTCGGATCAAGAATATCCACGTCAGACGCAAGAGATAGACGACTCTCTCTTAAAGTACCCTTTTGCCTCTCATTGTTTCATAAATTGACGATCGTATCCCTCTGTGGCACGCAGAAGCGTGATACGATTGGCCAAGGGGCACAAGATCTGACGACTTTCCTTCGCTCTGGATTTTTCCTTCGCTCTCTCCCTAATTTGAGAGCCGCTGAATATCCTGCAAATAATAGCATGTCCTGTGGATTTGAGCGGCAAAAGCTTCCAATCTGCAAAATGAATCACTTAACTATTGAGAATGATAATGATTTTGCAAGCTTGCTTGAGCTTGCAGCTAATAATGATGTTGAGGGTTTTGAACGATTGATTGAGCGTGATCCATCCTGTGTTGATGAGGTTGGACTATGGTATGGTCGCAGAAAGGGTTCAAAACTAATGGTCAATGAGCGGAGAACTCCTTTGATGGTTGCTGCCACCTATGGTAGCATTGATGTCATAAAGCTAATTCTATCACTATCCAATGCTAACATAAATCGTCCCTGTGGCCTTGACAAGAGCACTGCACTTCATTGCGCTGCATCTGGTGGAGCTGCTACTGTGGTTGATGTTGTAAAATTGCTCTTATCAGCAGGTGCTGATCCAAGGTCCGTGGATGCCAATGGTCACCGTCCAGTTGACGTTATTGTTGTTCCTCCCAAGCTTGATCATGTCAAAAGCAGTCTTGAAGAACTTCTTCAAACTGATGACTCCATGGCAGGATTTAATCTTAGGGTTAACACAACCGCATCAAAAGCTGATTCTCCTCCTTTATCAGCTTCACCAGAAAATGAGTCTCCATCTTCTGCACCAGATGTCCACTTGAAGTCAAAGTCAAACGATGCACCTGTTTCTCATGCATCAGAGAGGAAAGAATATCCTGTTGATCCATCTCTTCCAGACATCAAAAACAGTATATATTCAACTGATGAATTCCGAATGTATTCTTTCAAGGTCCGGCCTTGTTCACGTGCTTATTCCCATGATTGGACTGAATGTCCTTTTGTCCATCCTGGAGAAAATGCCCGTAGAAGGGACCCAAGGAAGTTCCATTATAGCTGTGTTCCTTGTCCTGATTTTCGGAAGGGGGCTTGCCGACGTGGTGATATGTGTGAGTATGCACATGGAGTTTTTGAGTGTTGGCTGCATCCTGCTCAATATCGTACCCGTCTCTGCAAGGATGGGACAAATTGCTCCAGAAGAGTTTGTTTCTTTGCCCACACTGCTGAGGAGCTTCGACCTTTATATGTTTCAACTGGTTCTGCTGTTCCCTCTCCTCGTTCAAGCACATCTGCCATGGATTTTGCTGCAGCTATGAGCCTGTTGCCTGGCTCCCCTTCCTCTATGTCTGTTATCTCCCCATCACCATTCACTCCGCCTATGTCTCCATCTGTCAATGGCATGTCACACTCTTCAGCTGCTTGGTCGCAAGCCAATGTCCCATCTTCGCATTTGCCAGGAAGTAATCTTCATTGCAGTCATTTGAGATTGTCGCATAATGCTAGAGATATTCCTGTGGAAGACTTGGATTTGTTGCCAGAATATGAATATCAGCAACAGCAGCTCTTTAATGAGTTGTCTTGTCTTCCTCAACAACCAGTGAATTCTAATAGCATGAATGAGATAGTTCGTATGAAGACCTTGACCCATTCAAACCTTGATGATCTATTTTCTGCTGAGAACTCTTCCCCTCGATTTGCTGATCCAGCAATGGCCTCTAGTGTTTACTCCCCAACGCACAAATCTGCAGTTCTCAATCAGTTTCAGCAGCAGCAAAGCTTGCTATCACCTGTGAATACAAAATTTCCTTCCAAGAATGTTGATCATTCTTTATTGCAGACTTCTTTCGCCGTTCAGTCACCAGGAAGGATGTCACCTCGTAAAGTGGAACCTATTTCCCCGATGAGCTCCAGAATTTCTATGCTAGCTCAAAGTGAGAAGATGCAACAATTCCGTAGCCTTAGCTCTCGGGAACTTGGTTCCAGCGCTGCGGCCGCTGTTGCTGGATCCTCAGTCAATTCTTGGTCCAAATGGGGTTCCCCCAACGGTAAGTTGGATTGGGCTGTCAGTAGCGATGATTTGGGTAAATTTCATAGATCATCTTCATTTGAGCTTGGGAACAATGGCGAAGAGCCTGACTTATCATGGGTGCAGTCTCTAGTCAAAGAATCTCCCGCTGACATTAAAGAGTCGTCCACTAGTGTCCCAGGCATGGCAGTGGCGGGAACCTCTGGTGGGGGATCACATATTAACGCCCAAATCGAACTTGTTGATCATGCTGTGTTAGGGGCATGGCTTGAACAAATGCAGCTTGATCATCTTGTGGCTCAGCAAAACTGA 2409 0.4516 MVGIKLLPQCFVVLGSRISTSDARDRRLSLKVPFCLSLFHKLTIVSLCGTQKRDTIGQGAQDLTTFLRSGFFLRSLPNLRAAEYPANNSMSCGFERQKLPICKMNHLTIENDNDFASLLELAANNDVEGFERLIERDPSCVDEVGLWYGRRKGSKLMVNERRTPLMVAATYGSIDVIKLILSLSNANINRPCGLDKSTALHCAASGGAATVVDVVKLLLSAGADPRSVDANGHRPVDVIVVPPKLDHVKSSLEELLQTDDSMAGFNLRVNTTASKADSPPLSASPENESPSSAPDVHLKSKSNDAPVSHASERKEYPVDPSLPDIKNSIYSTDEFRMYSFKVRPCSRAYSHDWTECPFVHPGENARRRDPRKFHYSCVPCPDFRKGACRRGDMCEYAHGVFECWLHPAQYRTRLCKDGTNCSRRVCFFAHTAEELRPLYVSTGSAVPSPRSSTSAMDFAAAMSLLPGSPSSMSVISPSPFTPPMSPSVNGMSHSSAAWSQANVPSSHLPGSNLHCSHLRLSHNARDIPVEDLDLLPEYEYQQQQLFNELSCLPQQPVNSNSMNEIVRMKTLTHSNLDDLFSAENSSPRFADPAMASSVYSPTHKSAVLNQFQQQQSLLSPVNTKFPSKNVDHSLLQTSFAVQSPGRMSPRKVEPISPMSSRISMLAQSEKMQQFRSLSSRELGSSAAAAVAGSSVNSWSKWGSPNGKLDWAVSSDDLGKFHRSSSFELGNNGEEPDLSWVQSLVKESPADIKESSTSVPGMAVAGTSGGGSHINAQIELVDHAVLGAWLEQMQLDHLVAQQN 802
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Acco02g1153 802 SUPERFAMILY Ankyrin repeat 109 240 IPR036770 -
Acco02g1153 802 SMART ANK_2a 160 190 IPR002110 GO:0005515
Acco02g1153 802 SMART ANK_2a 113 142 IPR002110 GO:0005515
Acco02g1153 802 SMART ANK_2a 195 227 IPR002110 GO:0005515
Acco02g1153 802 ProSiteProfiles Zinc finger C3H1-type profile. 379 401 IPR000571 GO:0046872
Acco02g1153 802 Pfam Ankyrin repeats (3 copies) 123 227 IPR002110 GO:0005515
Acco02g1153 802 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 379 399 IPR000571 GO:0046872
Acco02g1153 802 MobiDBLite consensus disorder prediction 273 321 - -
Acco02g1153 802 ProSiteProfiles Ankyrin repeat profile. 195 230 IPR002110 GO:0005515
Acco02g1153 802 ProSiteProfiles Ankyrin repeat region circular profile. 195 229 - -
Acco02g1153 802 SMART c3hfinal6 409 432 IPR000571 GO:0046872
Acco02g1153 802 SMART c3hfinal6 374 400 IPR000571 GO:0046872
Acco02g1153 802 FunFam Zinc finger CCCH domain-containing protein 66 332 400 - -
Acco02g1153 802 PANTHER UNKEMPT FAMILY MEMBER 120 747 IPR045234 -
Acco02g1153 802 MobiDBLite consensus disorder prediction 306 320 - -
Acco02g1153 802 MobiDBLite consensus disorder prediction 273 298 - -
Acco02g1153 802 Gene3D - 374 437 - -
Acco02g1153 802 Gene3D - 102 254 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Acco02g1153 Acco-ChrAcco02 8409100 8412714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Acco02g1153 110 795 C2H2 Transcription Factor Family AT5G12850 53.173 0.0 669
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Acco02g1153 Ank_2 5.8e-09 CL0465